C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 5730522E02 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032985 5730522E02Rik 10090 - 11:25602763-26210763 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109511 5730522E02Rik-001 25619087-26210572 protein_coding
  ENSMUST00000125773 5730522E02Rik-004 25617668-26210569 processed_transcript
  ENSMUST00000125987 5730522E02Rik-006 26103185-26210763 processed_transcript
  ENSMUST00000135168 5730522E02Rik-003 25849297-26081600 processed_transcript
  ENSMUST00000144503 5730522E02Rik-007 25602816-25620098 processed_transcript
  ENSMUST00000144841 5730522E02Rik-005 25635312-25652068 processed_transcript
  ENSMUST00000153834 5730522E02Rik-002 25602763-25648147 processed_transcript
  ENSMUST00000179180 5730522E02Rik-201 25647915-25769141 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000109511ENSMUST00000125773ENSMUST00000125987ENSMUST00000135168ENSMUST00000144841ENSMUST00000153834ENSMUST00000179180
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000109511 N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A 0.029±0.00 N/A N/A
ENSMUST00000125773 0.118±0.00 0.172±0.02 2.381±1.75 0.121±0.07 N/A N/A 0.087±0.03 0.174±0.08 0.096±0.00 0.398±0.13 0.055±0.00 0.086±0.03
ENSMUST00000125987 0.448±0.11 0.429±0.18 N/A 0.376±0.08 0.380±0.30 0.083±0.00 0.497±0.00 0.478±0.02 0.202±0.10 0.313±0.13 0.095±0.08 0.140±0.05
ENSMUST00000135168 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144841 0.022±0.00 N/A N/A N/A N/A 0.012±0.00 0.033±0.01 0.038±0.00 N/A 0.012±0.01 0.006±0.00 0.016±0.00
ENSMUST00000153834 0.106±0.01 N/A N/A N/A N/A N/A 0.381±0.00 N/A N/A 0.110±0.00 0.115±0.00 N/A
ENSMUST00000179180 N/A N/A N/A 0.168±0.00 N/A 0.111±0.00 N/A 0.126±0.00 N/A 0.333±0.30 N/A 0.219±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LM CIL_0007LM_0002 UCNEbase 11:24062983-26981636
CIL_0008X4 CIL_0008X4_0002 VISTA 11:25056345-25657682
CIL_0008XW CIL_0008XW_0002 VISTA 11:25229955-25831889
CIL_00080J CIL_00080J_0002 VISTA 11:25231831-25832986
CIL_000865 CIL_000865_0002 VISTA 11:25339787-25941406
CIL_0009CU CIL_0009CU_0002 VISTA 11:25341242-25942410
CIL_0008BR CIL_0008BR_0002 VISTA 11:25344060-25945642
CIL_0009BN CIL_0009BN_0002 VISTA 11:25363686-25964863
CIL_00094K CIL_00094K_0002 VISTA 11:25374201-25976633
CIL_0008BQ CIL_0008BQ_0002 VISTA 11:25403628-26005173
CIL_0008BP CIL_0008BP_0002 VISTA 11:25432272-26032988
CIL_000947 CIL_000947_0002 VISTA 11:25436856-26038024
CIL_00095L CIL_00095L_0002 VISTA 11:25572524-26173791
CIL_0008WY CIL_0008WY_0002 VISTA 11:25601725-26203091

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

No Homologs available.

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