C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TBC1 domain family, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033083 Tbc1d4 10090 - 14:101442360-101609191 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100340 Tbc1d4-002 101462974-101609191 protein_coding
  ENSMUST00000159484 Tbc1d4-005 101462794-101608667 retained_intron
  ENSMUST00000159664 Tbc1d4-007 101462963-101501108 nonsense_mediated_decay
  ENSMUST00000159668 Tbc1d4-006 101462794-101608667 retained_intron
  ENSMUST00000159951 Tbc1d4-003 101442368-101507326 protein_coding
  ENSMUST00000160297 Tbc1d4-004 101462572-101608832 retained_intron
  ENSMUST00000160473 Tbc1d4-009 101504707-101507270 retained_intron
  ENSMUST00000161304 Tbc1d4-008 101442368-101463223 retained_intron
  ENSMUST00000161991 Tbc1d4-001 101442360-101609033 protein_coding
  ENSMUST00000162617 Tbc1d4-010 101443723-101608486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100340ENSMUST00000159484ENSMUST00000159668ENSMUST00000159951ENSMUST00000160297ENSMUST00000161304ENSMUST00000161991ENSMUST00000162617
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100340 N/A N/A N/A N/A N/A N/A 2.360±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159484 N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A
ENSMUST00000159668 N/A N/A N/A N/A N/A 1.150±0.00 N/A N/A 0.128±0.04 N/A N/A 2.731±0.44 N/A 0.225±0.00
ENSMUST00000159951 N/A N/A N/A 0.828±0.00 2.138±0.00 N/A N/A N/A N/A N/A N/A 1.852±0.78 0.897±0.60 N/A
ENSMUST00000160297 N/A 7.656±1.05 N/A N/A 4.299±1.89 1.756±0.37 N/A N/A 0.198±0.11 N/A N/A 2.531±0.80 N/A N/A
ENSMUST00000161304 N/A N/A 1.622±0.20 0.778±0.15 6.606±2.16 1.334±0.24 3.795±0.00 1.382±0.00 0.329±0.10 N/A 2.981±0.69 4.198±2.42 1.510±1.74 0.367±0.16
ENSMUST00000161991 5.507±1.86 4.150±0.00 1.246±0.16 1.173±0.62 3.855±1.87 1.012±0.23 2.320±0.33 2.333±0.45 0.318±0.12 2.720±0.78 0.951±0.21 2.368±0.69 2.546±3.37 0.400±0.22
ENSMUST00000162617 1.655±0.61 3.616±0.72 N/A 0.466±0.00 3.364±1.22 0.854±0.36 3.270±0.23 0.992±0.65 0.168±0.04 1.763±0.49 N/A 1.567±0.48 0.383±0.00 0.234±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004F CIL_00004F_0002 CGP 14:101442360-101640686

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0016192 IEA vesicle-mediated transport
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0031339 IEA negative regulation of vesicle fusion
GO:0031988 IEA membrane-bounded vesicle
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0032869 IEA cellular response to insulin stimulus
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075156 TBC1D4 TBC1 domain family, member 4 protein_coding Danio_rerio
ENSG00000136111 TBC1D4 TBC1 domain family, member 4 protein_coding Homo_sapiens

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