C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: podocalyxin-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033152 Podxl2 10090 - 6:88842558-88875044 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038409 Podxl2-003 88842565-88874045 protein_coding
  ENSMUST00000061262 Podxl2-001 88842565-88874597 protein_coding
  ENSMUST00000124562 Podxl2-008 88843538-88845925 retained_intron
  ENSMUST00000135843 Podxl2-005 88864811-88874377 retained_intron
  ENSMUST00000140455 Podxl2-006 88849679-88874738 protein_coding
  ENSMUST00000141348 Podxl2-009 88844176-88849377 protein_coding
  ENSMUST00000141401 Podxl2-010 88842558-88843720 processed_transcript
  ENSMUST00000142266 Podxl2-011 88849814-88865266 processed_transcript
  ENSMUST00000145780 Podxl2-007 88849679-88874796 protein_coding
  ENSMUST00000145944 Podxl2-002 88849467-88875044 protein_coding
  ENSMUST00000153852 Podxl2-004 88864276-88874989 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038409ENSMUST00000061262ENSMUST00000135843ENSMUST00000141348ENSMUST00000141401ENSMUST00000145780ENSMUST00000145944
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038409 N/A N/A N/A 108.125±3.88 0.402±0.00 N/A N/A 0.130±0.12 N/A 7.564±1.53 4.529±1.42 0.794±0.31 2.250±0.06
ENSMUST00000061262 N/A 15.704±0.00 N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A
ENSMUST00000135843 N/A 51.934±6.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141348 N/A N/A N/A 174.106±0.00 N/A N/A N/A N/A N/A N/A 12.136±9.90 2.083±1.62 5.509±0.00
ENSMUST00000141401 11.129±0.00 80.772±12.74 N/A 221.823±48.91 8.209±0.85 4.125±1.19 2.023±0.82 0.406±0.29 6.862±2.74 N/A 42.800±7.94 0.832±0.43 N/A
ENSMUST00000145780 N/A N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A 2.040±0.00
ENSMUST00000145944 8.452±0.00 24.938±4.45 2.232±0.00 129.533±8.22 1.900±0.14 2.171±0.53 N/A 0.223±0.14 2.246±0.05 N/A 15.452±6.36 1.670±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EC CIL_0008EC_0002 VISTA 6:88734676-89336253

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0050901 IEA leukocyte tethering or rolling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000114631 PODXL2 podocalyxin-like 2 protein_coding Homo_sapiens

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