C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat domain 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033285 Wdr3 10090 - 3:100138180-100162407 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052120 Wdr3-001 100138180-100162407 protein_coding
  ENSMUST00000125059 Wdr3-003 100157324-100162332 nonsense_mediated_decay
  ENSMUST00000129319 Wdr3-004 100142501-100143582 retained_intron
  ENSMUST00000135812 Wdr3-005 100138735-100141621 retained_intron
  ENSMUST00000146989 Wdr3-002 100142499-100162407 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000052120ENSMUST00000146989
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000052120 6.945±3.24 3.173±1.04 7.247±1.00 8.768±4.04 5.877±1.46 4.413±1.07 2.096±0.80 4.123±1.29 6.848±3.10 5.405±0.74 2.769±0.17 8.300±2.62 10.912±4.16
ENSMUST00000146989 N/A N/A N/A N/A 1.190±0.00 N/A N/A N/A N/A 1.925±0.00 N/A 1.719±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HM CIL_0008HM_0002 VISTA 3:100137197-100740090

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0008150 ND biological_process
GO:0031965 IEA nuclear membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011079 wdr3 WD repeat domain 3 protein_coding Danio_rerio
ENSG00000065183 WDR3 WD repeat domain 3 protein_coding Homo_sapiens

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