C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008HM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm97 VISTA 9606 1:117358424-117964281
GeneTranscriptPositionBiotype
ENSG00000065183 (WDR3)
WD repeat domain 3 		ENST00000349139 (WDR3-001) 117929768-117966542 protein_coding
ENST00000369441 (WDR3-201) 117929720-117941788 protein_coding
ENST00000471680 (WDR3-003) 117929775-117938529 processed_transcript
ENST00000487202 (WDR3-002) 117929724-117938558 processed_transcript
ENSG00000155761 (SPAG17)
sperm associated antigen 17 		ENST00000336338 (SPAG17-001) 117953864-118185223 protein_coding
ENST00000437255 (SPAG17-002) 117965097-118008070 protein_coding
ENST00000463628 (SPAG17-004) 118085978-118087162 processed_transcript
ENST00000465053 (SPAG17-003) 118150397-118185223 processed_transcript
ENST00000466857 (SPAG17-012) 117953861-117964810 processed_transcript
ENST00000469128 (SPAG17-011) 117953873-117970118 processed_transcript
ENST00000470550 (SPAG17-008) 118025264-118040767 processed_transcript
ENST00000473472 (SPAG17-006) 118073941-118081296 processed_transcript
ENST00000477444 (SPAG17-005) 118054054-118081486 processed_transcript
ENST00000478697 (SPAG17-013) 117953864-117966752 processed_transcript
ENST00000483383 (SPAG17-009) 117973482-117987992 processed_transcript
ENST00000486589 (SPAG17-007) 118031746-118039342 processed_transcript
ENST00000492438 (SPAG17-010) 117971780-117984748 processed_transcript
ENSG00000183508 (FAM46C)
family with sequence similarity 46, member C 		ENST00000369448 (FAM46C-001) 117605934-117628372 protein_coding
ENSG00000196505 (GDAP2)
ganglioside induced differentiation associated protein 2 		ENST00000369442 (GDAP2-002) 117877222-117929583 protein_coding
ENST00000369443 (GDAP2-001) 117863485-117929630 protein_coding
ENST00000464026 (GDAP2-006) 117882904-117899130 processed_transcript
ENST00000491626 (GDAP2-005) 117870184-117887733 processed_transcript
ENST00000493555 (GDAP2-004) 117896616-117920207 processed_transcript
ENST00000494224 (GDAP2-003) 117912530-117929560 processed_transcript
ENSG00000198162 (MAN1A2)
mannosidase, alpha, class 1A, member 2 		ENST00000356554 (MAN1A2-001) 117367449-117528872 protein_coding
ENST00000421535 (MAN1A2-004) 117496780-117523322 protein_coding
ENST00000422329 (MAN1A2-005) 117502861-117525352 protein_coding
ENST00000449370 (MAN1A2-002) 117420597-117515939 protein_coding
ENST00000482811 (MAN1A2-003) 117367943-117420630 processed_transcript
ENSG00000213262 (AL365331.2)
 ENST00000430995 (AL365331.2-001) 117640812-117641639 processed_pseudogene
ENSG00000226755 (VPS25P1)
VPS25 pseudogene 1 		ENST00000455691 (VPS25P1-001) 117549415-117549922 processed_pseudogene
ENSG00000228217 (AL390877.1)
 ENST00000423940 (AL390877.1-001) 117778087-117778506 processed_pseudogene
ENSG00000236866 (AL157902.3)
 ENST00000425010 (AL157902.3-002) 117603999-117605770 antisense
ENST00000440801 (AL157902.3-001) 117596832-117605711 antisense
ENST00000456126 (AL157902.3-003) 117604624-117605685 antisense
ENSG00000270719 (RP11-134N8.2)
 ENST00000605704 (RP11-134N8.2-001) 117700029-117700242 processed_pseudogene
ENSG00000271427 (RP11-188D8.1)
 ENST00000604156 (RP11-188D8.1-001) 117364899-117365473 lincRNA
ENSG00000279513 (RP4-675C20.4)
 ENST00000623435 (RP4-675C20.4-001) 117493515-117495006 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0008HM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm97 VISTA 10090 3:100137197-100740090
GeneTranscriptPositionBiotype
ENSMUSG00000008763 (Man1a2)
mannosidase, alpha, class 1A, member 2 		ENSMUST00000008907 (Man1a2-001) 100562208-100685503 protein_coding
ENSMUST00000123442 (Man1a2-003) 100656061-100685308 processed_transcript
ENSMUST00000130066 (Man1a2-006) 100620033-100684613 protein_coding
ENSMUST00000133642 (Man1a2-004) 100587910-100652592 processed_transcript
ENSMUST00000146818 (Man1a2-002) 100684594-100685459 processed_transcript
ENSMUSG00000027865 (Gdap2)
ganglioside-induced differentiation-associated-protein 2 		ENSMUST00000029459 (Gdap2-001) 100162381-100206981 protein_coding
ENSMUST00000106997 (Gdap2-002) 100162518-100202470 protein_coding
ENSMUST00000150223 (Gdap2-003) 100162544-100169997 processed_transcript
ENSMUSG00000033285 (Wdr3)
WD repeat domain 3 		ENSMUST00000052120 (Wdr3-001) 100138180-100162407 protein_coding
ENSMUST00000125059 (Wdr3-003) 100157324-100162332 nonsense_mediated_decay
ENSMUST00000129319 (Wdr3-004) 100142501-100143582 retained_intron
ENSMUST00000135812 (Wdr3-005) 100138735-100141621 retained_intron
ENSMUST00000146989 (Wdr3-002) 100142499-100162407 nonsense_mediated_decay
ENSMUSG00000044468 (Fam46c)
family with sequence similarity 46, member C 		ENSMUST00000061455 (Fam46c-001) 100468057-100489324 protein_coding
ENSMUST00000128107 (Fam46c-003) 100451628-100489198 processed_transcript
ENSMUST00000139833 (Fam46c-002) 100451631-100489194 processed_transcript
ENSMUSG00000053957 (Gm12474)
predicted gene 12474 		ENSMUST00000122898 (Gm12474-001) 100489664-100523920 lincRNA
ENSMUSG00000081440 (Gm12464)
predicted gene 12464 		ENSMUST00000121385 (Gm12464-001) 100413560-100414575 processed_pseudogene
ENSMUSG00000083842 (Gm12485)
predicted gene 12485 		ENSMUST00000119641 (Gm12485-001) 100680265-100680555 processed_pseudogene
ENSMUSG00000086923 (4930406D18Rik)
RIKEN cDNA 4930406D18 gene 		ENSMUST00000147951 (4930406D18Rik-002) 100426405-100428865 lincRNA
ENSMUST00000152827 (4930406D18Rik-001) 100426439-100437754 lincRNA

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008HM_0001ENSG00000065183ENST00000349139ENST00000369441ENST00000471680ENST00000487202ENSG00000155761ENST00000336338ENST00000437255ENST00000463628ENST00000465053ENST00000466857ENST00000469128ENST00000470550ENST00000473472ENST00000477444ENST00000478697ENST00000483383ENST00000486589ENST00000492438ENSG00000183508ENST00000369448ENSG00000196505ENST00000369442ENST00000369443ENST00000464026ENST00000491626ENST00000493555ENST00000494224ENSG00000198162ENST00000356554ENST00000421535ENST00000422329ENST00000449370ENST00000482811ENSG00000213262ENST00000430995ENSG00000226755ENST00000455691ENSG00000228217ENST00000423940ENSG00000236866ENST00000425010ENST00000440801ENST00000456126ENSG00000270719ENST00000605704ENSG00000271427ENST00000604156ENSG00000279513ENST00000623435CIL_0008HM_0002ENSMUSG00000008763ENSMUST00000008907ENSMUST00000123442ENSMUST00000130066ENSMUST00000133642ENSMUST00000146818ENSMUSG00000027865ENSMUST00000029459ENSMUST00000106997ENSMUST00000150223ENSMUSG00000033285ENSMUST00000052120ENSMUST00000125059ENSMUST00000129319ENSMUST00000135812ENSMUST00000146989ENSMUSG00000044468ENSMUST00000061455ENSMUST00000128107ENSMUST00000139833ENSMUSG00000053957ENSMUST00000122898ENSMUSG00000081440ENSMUST00000121385ENSMUSG00000083842ENSMUST00000119641ENSMUSG00000086923ENSMUST00000147951ENSMUST00000152827
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008HM_0001ENSG00000065183ENST00000349139ENST00000369441ENSG00000155761ENST00000336338ENST00000470550ENSG00000183508ENST00000369448ENSG00000196505ENST00000369442ENST00000369443ENST00000491626ENST00000493555ENSG00000198162ENST00000356554ENSG00000213262ENST00000430995ENSG00000226755ENST00000455691ENSG00000228217ENST00000423940ENSG00000236866ENST00000425010ENST00000440801ENST00000456126ENSG00000270719ENST00000605704ENSG00000271427ENST00000604156ENSG00000279513ENST00000623435CIL_0008HM_0002ENSMUSG00000008763ENSMUST00000008907ENSMUST00000123442ENSMUST00000130066ENSMUST00000146818ENSMUSG00000027865ENSMUST00000029459ENSMUSG00000033285ENSMUST00000052120ENSMUST00000146989ENSMUSG00000044468ENSMUST00000061455ENSMUSG00000053957ENSMUST00000122898ENSMUSG00000081440ENSMUST00000121385ENSMUSG00000083842ENSMUST00000119641ENSMUSG00000086923ENSMUST00000147951ENSMUST00000152827
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065183 ENST00000349139 1.744±0.00 0.493±0.00 N/A 1.290±0.29 1.265±0.43 0.644±0.00 0.499±0.30 2.178±0.00 0.230±0.00 1.267±0.57 0.896±0.35 1.647±0.57 1.885±0.61 3.859±0.32
ENST00000369441 N/A N/A N/A 3.094±0.00 N/A N/A N/A N/A N/A 3.727±0.00 1.694±0.00 N/A 2.098±0.00 N/A
ENST00000471680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000155761 ENST00000336338 N/A N/A N/A N/A 0.662±0.00 N/A N/A N/A N/A 0.756±0.07 N/A 1.417±0.00 N/A 9.458±4.24
ENST00000437255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.502±0.00
ENST00000473472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183508 ENST00000369448 0.871±0.00 5.892±0.00 1.862±0.00 0.109±0.10 3.493±1.41 5.818±2.11 1.391±0.35 2.700±1.60 2.231±0.01 5.169±2.86 4.603±3.45 3.665±1.89 1.785±1.05 22.821±10.67
ENSG00000196505 ENST00000369442 N/A N/A N/A 1.351±0.98 2.538±0.00 2.182±0.00 0.460±0.00 N/A 0.336±0.00 3.585±0.00 N/A 1.023±0.00 0.661±0.12 1.968±0.00
ENST00000369443 1.374±0.00 0.209±0.00 3.625±0.00 0.820±0.74 1.556±0.70 3.589±0.00 0.583±0.00 1.589±1.13 6.716±0.00 4.644±0.00 0.581±0.34 1.362±1.29 0.488±0.12 0.871±0.24
ENST00000464026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491626 N/A N/A N/A N/A N/A 1.860±0.00 N/A 2.901±0.00 N/A N/A 0.659±0.00 2.239±0.00 2.211±0.61 5.761±1.14
ENST00000493555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.826±0.00 1.808±0.95 5.891±1.62
ENST00000494224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198162 ENST00000356554 5.533±0.00 3.312±0.00 1.760±0.00 4.150±0.00 4.697±0.89 2.982±0.62 2.138±0.92 4.720±0.28 4.468±0.15 2.741±0.00 1.667±1.29 3.500±1.04 7.152±2.15 3.572±1.06
ENST00000421535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213262 ENST00000430995 N/A 0.044±0.00 1.058±0.00 N/A 0.196±0.17 0.139±0.00 0.013±0.00 0.332±0.28 N/A 0.141±0.00 N/A 0.096±0.10 N/A 0.087±0.06
ENSG00000226755 ENST00000455691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.08
ENSG00000228217 ENST00000423940 N/A N/A 0.151±0.00 N/A 0.351±0.00 0.108±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236866 ENST00000425010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.696±0.00
ENST00000440801 N/A 0.101±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.141±0.00
ENST00000456126 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.422±0.00 N/A N/A N/A 0.976±0.72
ENSG00000270719 ENST00000605704 N/A N/A 0.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271427 ENST00000604156 N/A 0.429±0.00 N/A 0.137±0.00 0.228±0.00 0.050±0.00 0.027±0.00 0.067±0.00 0.059±0.00 N/A N/A 0.205±0.13 0.060±0.01 0.067±0.02
ENSG00000279513 ENST00000623435 0.052±0.00 0.146±0.00 0.126±0.00 0.289±0.13 0.108±0.02 0.096±0.08 0.293±0.28 0.188±0.15 0.162±0.09 0.301±0.25 N/A 0.029±0.01 0.044±0.01 0.121±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008763 ENSMUST00000008907 5.841±4.02 5.016±0.35 3.512±0.59 5.023±2.27 3.144±1.47 7.645±0.78 1.786±0.56 3.495±1.59 2.311±0.94 4.589±1.54 1.549±0.30 7.324±2.49 9.850±2.56 4.668±1.01
ENSMUST00000123442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.019±0.00 N/A 89.026±0.00
ENSMUST00000130066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.314±0.00 47.054±11.83 58.546±0.00
ENSMUST00000133642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146818 N/A 9.216±4.60 N/A N/A N/A 13.434±0.11 N/A N/A N/A N/A N/A 9.129±0.10 N/A N/A
ENSMUSG00000027865 ENSMUST00000029459 6.151±0.72 2.812±0.22 5.560±0.71 7.941±0.16 5.813±1.39 3.469±0.16 2.953±0.32 4.804±0.84 7.076±1.73 5.957±0.41 1.760±0.28 4.470±0.83 10.498±1.22 11.417±0.30
ENSMUST00000106997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033285 ENSMUST00000052120 6.945±3.24 3.173±1.04 7.247±1.00 8.768±4.04 5.877±1.46 4.413±1.07 2.096±0.80 4.123±1.29 6.848±3.10 5.405±0.74 2.769±0.17 8.300±2.62 10.912±4.16 N/A
ENSMUST00000125059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146989 N/A N/A N/A N/A 1.190±0.00 N/A N/A N/A N/A 1.925±0.00 N/A 1.719±0.00 N/A N/A
ENSMUSG00000044468 ENSMUST00000061455 1.237±0.51 0.587±0.07 0.824±0.01 0.526±0.20 2.692±0.67 3.392±0.35 6.005±4.77 1.961±0.15 20.817±21.06 8.423±1.67 0.227±0.09 7.733±1.72 3.887±1.96 104.276±51.82
ENSMUST00000128107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000053957 ENSMUST00000122898 0.090±0.04 0.101±0.08 0.185±0.00 0.041±0.02 0.325±0.12 0.170±0.04 0.063±0.05 0.099±0.06 N/A 0.798±0.06 0.040±0.01 0.506±0.14 0.217±0.23 0.385±0.08
ENSMUSG00000081440 ENSMUST00000121385 0.030±0.00 N/A N/A N/A 0.032±0.00 0.068±0.00 N/A N/A 0.017±0.01 N/A N/A 0.067±0.03 0.027±0.02 0.046±0.02
ENSMUSG00000083842 ENSMUST00000119641 0.299±0.00 N/A 0.074±0.00 N/A N/A 0.748±0.23 N/A N/A N/A 0.345±0.04 N/A N/A N/A N/A
ENSMUSG00000086923 ENSMUST00000147951 N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A 0.024±0.01 N/A N/A N/A 0.010±0.00 10.543±7.28
ENSMUST00000152827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.676±5.57

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