C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GLIS family zinc finger 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034762 Glis1 10090 + 4:107434591-107635061 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046005 Glis1-001 107434719-107635061 protein_coding
  ENSMUST00000106738 Glis1-002 107438998-107635061 protein_coding
  ENSMUST00000125573 Glis1-006 107615000-107632393 processed_transcript
  ENSMUST00000130573 Glis1-003 107434591-107436036 processed_transcript
  ENSMUST00000135835 Glis1-004 107434617-107563900 protein_coding
  ENSMUST00000138211 Glis1-005 107581203-107627471 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046005ENSMUST00000106738ENSMUST00000125573ENSMUST00000130573ENSMUST00000135835ENSMUST00000138211
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046005 0.056±0.02 N/A N/A 0.176±0.07 0.066±0.00 0.073±0.00 N/A 2.280±1.34 0.030±0.00 0.159±0.00 0.051±0.01 0.302±0.04 7.038±10.14 0.425±0.21
ENSMUST00000106738 0.229±0.00 0.174±0.00 0.057±0.00 N/A 0.294±0.21 0.107±0.02 0.059±0.02 1.700±0.00 0.026±0.01 0.088±0.00 N/A 0.199±0.09 0.998±0.11 N/A
ENSMUST00000125573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A
ENSMUST00000130573 N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135835 N/A 0.398±0.18 N/A N/A N/A 0.190±0.09 N/A N/A N/A N/A 0.255±0.00 N/A 13.844±0.00 0.867±0.00
ENSMUST00000138211 N/A N/A N/A N/A N/A N/A 0.059±0.01 N/A N/A N/A 0.110±0.00 0.518±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0002 VISTA 4:107302048-107904613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027933 glis1b GLIS family zinc finger 1b protein_coding Danio_rerio
ENSDARG00000068580 glis1a GLIS family zinc finger 1a protein_coding Danio_rerio
ENSG00000174332 GLIS1 GLIS family zinc finger 1 protein_coding Homo_sapiens

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