C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035469 Rcbtb1 10090 + 14:59201209-59237265 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022551 Rcbtb1-003 59201242-59237265 protein_coding
  ENSMUST00000043227 Rcbtb1-001 59201228-59237265 protein_coding
  ENSMUST00000095778 Rcbtb1-004 59201483-59222526 processed_transcript
  ENSMUST00000140136 Rcbtb1-005 59201476-59209971 protein_coding
  ENSMUST00000142326 Rcbtb1-006 59201503-59210067 protein_coding
  ENSMUST00000147280 Rcbtb1-008 59222588-59224684 retained_intron
  ENSMUST00000153225 Rcbtb1-007 59216437-59224723 processed_transcript
  ENSMUST00000172810 Rcbtb1-011 59205613-59229961 nonsense_mediated_decay
  ENSMUST00000173547 Rcbtb1-009 59201209-59223214 protein_coding
  ENSMUST00000174009 Rcbtb1-002 59201234-59235525 nonsense_mediated_decay
  ENSMUST00000174830 Rcbtb1-010 59217605-59237259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043227ENSMUST00000153225ENSMUST00000174009ENSMUST00000174830
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043227 6.081±2.01 6.627±0.81 14.010±1.23 11.942±4.85 4.395±0.62 6.636±0.64 1.863±0.22 6.431±0.47 10.415±1.45 5.059±0.21 2.365±0.92 6.604±2.48 5.059±4.48 1.472±0.74
ENSMUST00000153225 N/A N/A N/A N/A 5.139±0.00 N/A N/A N/A N/A N/A N/A 14.458±1.15 N/A N/A
ENSMUST00000174009 N/A 10.615±4.39 N/A N/A 4.239±1.57 3.466±0.36 N/A 1.867±0.00 4.342±0.17 2.833±0.00 N/A 4.263±1.35 N/A 0.734±0.00
ENSMUST00000174830 N/A N/A N/A 9.315±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 8.269±0.00 2.098±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0016568 IEA chromatin modification

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036645 rcbtb1 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 protein_coding Danio_rerio
ENSDARG00000090687 rcbtb2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 protein_coding Danio_rerio
ENSG00000136144 RCBTB1 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 protein_coding Homo_sapiens

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