C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1700021K19 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035629 1700021K19Rik 10090 - 16:32821703-32877766 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040986 1700021K19Rik-001 32821728-32868351 protein_coding
  ENSMUST00000089684 1700021K19Rik-004 32821707-32868339 protein_coding
  ENSMUST00000115105 1700021K19Rik-201 32821703-32868366 protein_coding
  ENSMUST00000119810 1700021K19Rik-002 32823859-32877766 protein_coding
  ENSMUST00000135480 1700021K19Rik-003 32823467-32838594 retained_intron
  ENSMUST00000140229 1700021K19Rik-005 32821707-32824920 retained_intron
  ENSMUST00000149621 1700021K19Rik-006 32861460-32868338 processed_transcript
  ENSMUST00000152920 1700021K19Rik-008 32827928-32829718 retained_intron
  ENSMUST00000153556 1700021K19Rik-007 32835525-32836571 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040986ENSMUST00000089684ENSMUST00000115105ENSMUST00000119810ENSMUST00000140229
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040986 9.670±1.53 11.351±1.65 8.103±0.30 4.274±0.00 15.141±3.65 11.630±1.70 7.674±2.83 9.873±1.98 3.519±0.89 16.135±3.04 7.435±0.54 13.828±3.53 14.531±7.80 8.727±2.07
ENSMUST00000089684 N/A N/A N/A 10.783±2.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115105 N/A 3.103±0.91 N/A N/A 4.445±0.33 N/A N/A N/A 1.040±0.08 N/A N/A 3.154±0.70 7.789±1.00 N/A
ENSMUST00000119810 N/A 3.902±0.79 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.842±0.02 N/A 6.687±0.00
ENSMUST00000140229 N/A N/A 7.276±1.18 N/A N/A N/A N/A 3.179±0.00 1.661±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0002 VISTA 16:32268412-32870796
CIL_0006CE CIL_0006CE_0002 CGP 16:32821703-32908963

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005764 IEA lysosome
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005794 IEA Golgi apparatus
GO:0006897 IEA endocytosis
GO:0006914 IEA autophagy
GO:0010507 IEA negative regulation of autophagy
GO:0045806 IEA negative regulation of endocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078752 si:ch1073-280h16.1 si:ch1073-280h16.1 protein_coding Danio_rerio
ENSG00000145016 KIAA0226 KIAA0226 protein_coding Homo_sapiens

Loading