C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RUN and SH3 domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035969 Rusc2 10090 + 4:43381979-43427088 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035645 Rusc2-001 43381979-43427088 protein_coding
  ENSMUST00000098106 Rusc2-003 43406435-43427088 protein_coding
  ENSMUST00000123447 Rusc2-013 43423591-43424011 retained_intron
  ENSMUST00000125393 Rusc2-002 43401238-43427073 retained_intron
  ENSMUST00000125399 Rusc2-010 43401253-43414739 protein_coding
  ENSMUST00000131037 Rusc2-018 43382070-43416190 processed_transcript
  ENSMUST00000131668 Rusc2-004 43414696-43427088 protein_coding
  ENSMUST00000135216 Rusc2-006 43383449-43414840 protein_coding
  ENSMUST00000136360 Rusc2-009 43384332-43414893 protein_coding
  ENSMUST00000139198 Rusc2-012 43406557-43415179 protein_coding
  ENSMUST00000144911 Rusc2-005 43382057-43414796 protein_coding
  ENSMUST00000146710 Rusc2-017 43416438-43426365 processed_transcript
  ENSMUST00000149221 Rusc2-014 43407329-43421802 protein_coding
  ENSMUST00000149556 Rusc2-011 43406502-43422455 processed_transcript
  ENSMUST00000150066 Rusc2-008 43384279-43421919 processed_transcript
  ENSMUST00000152322 Rusc2-007 43383510-43414755 protein_coding
  ENSMUST00000154754 Rusc2-015 43422492-43424373 retained_intron
  ENSMUST00000173682 Rusc2-016 43414696-43426649 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035645ENSMUST00000098106ENSMUST00000125393ENSMUST00000131037ENSMUST00000131668ENSMUST00000154754ENSMUST00000173682
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035645 1.912±0.75 3.603±1.12 4.793±1.26 5.023±0.00 1.233±0.39 1.917±0.97 2.170±0.48 1.636±0.43 0.892±0.66 9.798±2.82 2.922±0.98 2.812±1.20 2.307±1.64 4.199±1.61
ENSMUST00000098106 1.845±0.62 1.964±0.62 2.240±0.80 9.932±6.76 0.758±0.45 1.016±0.28 1.652±0.23 1.129±0.24 0.255±0.28 8.281±0.88 1.388±0.37 2.373±0.75 4.720±3.79 1.077±0.00
ENSMUST00000125393 1.109±0.00 1.552±0.00 N/A N/A 0.176±0.00 1.405±0.10 N/A N/A 0.295±0.23 N/A N/A 1.873±0.42 0.676±0.00 0.326±0.00
ENSMUST00000131037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.751±0.00 N/A N/A
ENSMUST00000131668 1.601±0.00 2.664±0.82 1.601±0.22 6.637±3.38 1.526±0.73 1.377±0.41 1.614±0.37 1.212±0.12 0.587±0.28 5.287±1.06 1.867±0.60 2.866±0.68 3.808±2.70 1.025±0.21
ENSMUST00000154754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.668±0.30 N/A N/A
ENSMUST00000173682 N/A N/A N/A 7.015±0.00 N/A N/A N/A N/A N/A N/A N/A 1.329±0.00 N/A 1.143±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CH CIL_0001CH_0002 CGP 4:43267159-43427088
CIL_0004XM CIL_0004XM_0002 CGP 4:43381979-43429134

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008150 ND biological_process
GO:0017137 IEA Rab GTPase binding
GO:0031410 IEA cytoplasmic vesicle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000095288 rusc2 RUN and SH3 domain containing 2 protein_coding Danio_rerio
ENSG00000198853 RUSC2 RUN and SH3 domain containing 2 protein_coding Homo_sapiens

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