C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037296 Lsm1 10090 + 8:25785591-25803975 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038421 Lsm1-201 25785591-25803975 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038421 3.514±1.20 5.645±2.02 4.388±1.70 7.724±3.77 3.107±0.23 2.058±0.08 1.723±0.11 3.283±0.14 3.312±1.40 1.849±0.20 2.029±0.35 3.334±0.93 6.564±2.33 3.313±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0002 VISTA 8:25243011-25845762

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0071044 ISS histone mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043177 lsm1 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Danio_rerio
ENSG00000175324 LSM1 LSM1, U6 small nuclear RNA associated protein_coding Homo_sapiens

Loading