C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM1, U6 small nuclear RNA associated
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175324 LSM1 9606 - 8:38163321-38176730 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311351 LSM1-001 38163321-38176716 protein_coding
  ENST00000520286 LSM1-004 38163428-38176730 processed_transcript
  ENST00000520755 LSM1-002 38163335-38176674 protein_coding
  ENST00000522515 LSM1-003 38163359-38176716 processed_transcript
  ENST00000523511 LSM1-005 38163610-38176488 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311351ENST00000520286
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311351 13.595±0.00 5.435±0.00 12.131±0.00 8.855±6.12 13.993±0.00 6.603±1.76 12.108±0.00 6.549±0.00 33.229±0.00 23.730±9.07 33.594±0.00
ENST00000520286 N/A N/A N/A N/A N/A N/A N/A N/A 27.882±0.00 22.611±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0003Z0 CIL_0003Z0_0002 CGP 8:38163321-38213301

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030529 IEA ribonucleoprotein complex
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding
GO:0071044 IMP histone mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043177 lsm1 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000037296 Lsm1 LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Mus_musculus

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