C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mesoderm development candidate 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038503 Mesdc2 10090 + 7:83884466-83901532 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094215 Mesdc2-001 83892000-83901532 protein_coding
  ENSMUST00000130103 Mesdc2-002 83892002-83897767 protein_coding
  ENSMUST00000138803 Mesdc2-004 83884466-83897940 processed_transcript
  ENSMUST00000153377 Mesdc2-003 83892330-83898080 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094215ENSMUST00000130103ENSMUST00000153377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094215 10.773±3.64 9.897±0.97 10.620±0.80 5.522±2.42 6.035±0.37 5.714±0.15 4.950±0.51 7.229±0.57 5.135±2.43 8.409±0.57 2.613±0.54 10.839±2.55 3.968±1.66 13.245±5.64
ENSMUST00000130103 N/A N/A N/A 27.174±0.00 N/A N/A N/A N/A N/A N/A 5.154±0.99 64.976±0.00 51.348±14.40 56.886±0.00
ENSMUST00000153377 N/A N/A N/A 5.168±0.00 N/A N/A N/A N/A N/A N/A 2.769±0.57 17.860±2.62 11.026±1.21 18.409±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CN CIL_0009CN_0002 VISTA 7:83511918-84115428

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0006457 IDA protein folding
GO:0007498 NAS mesoderm development
GO:0016055 IEA Wnt signaling pathway
GO:0034394 IDA protein localization to cell surface
GO:0050750 IPI low-density lipoprotein particle receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063030 mesdc2 mesoderm development candidate 2 protein_coding Danio_rerio
ENSG00000117899 MESDC2 mesoderm development candidate 2 protein_coding Homo_sapiens

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