C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mesoderm development candidate 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117899 MESDC2 9606 - 15:80946289-80989878 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261758 MESDC2-001 80975747-80989878 protein_coding
  ENST00000422879 MESDC2-003 80948086-80989819 nonsense_mediated_decay
  ENST00000559537 MESDC2-006 80952075-80989795 nonsense_mediated_decay
  ENST00000560189 MESDC2-004 80948676-80979140 processed_transcript
  ENST00000560244 MESDC2-005 80948502-80978813 processed_transcript
  ENST00000561312 MESDC2-201 80947329-80989828 protein_coding
  ENST00000619987 MESDC2-002 80946289-80989828 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261758ENST00000561312ENST00000619987
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261758 6.505±0.00 1.291±0.00 5.553±2.82 4.754±4.22 4.240±2.03 2.637±2.11 7.047±5.47 4.691±3.46 6.422±5.46 0.986±0.40 7.546±4.36 22.290±1.21 9.012±3.93
ENST00000561312 2.337±0.00 0.826±0.00 N/A 1.043±0.00 N/A N/A 1.290±0.00 N/A N/A 0.636±0.00 4.180±0.00 19.169±0.00 6.382±0.00
ENST00000619987 N/A 0.377±0.00 N/A N/A N/A 0.228±0.00 N/A 0.527±0.00 N/A 0.503±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XI CIL_0000XI_0002 CGP 15:80679684-80951776
CIL_00051G CIL_00051G_0002 CGP 15:80779343-80989878
CIL_0009CN CIL_0009CN_0001 VISTA 15:80790387-81397930
CIL_00050V CIL_00050V_0002 CGP 15:80946289-81005788

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0006457 ISS protein folding
GO:0007498 NAS mesoderm development
GO:0016055 IEA Wnt signaling pathway
GO:0034394 IEA protein localization to cell surface
GO:0050750 IEA low-density lipoprotein particle receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063030 mesdc2 mesoderm development candidate 2 protein_coding Danio_rerio
ENSMUSG00000038503 Mesdc2 mesoderm development candidate 2 protein_coding Mus_musculus

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