C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: saccharopine dehydrogenase (putative)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038936 Sccpdh 10090 + 1:179668210-179687189 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040538 Sccpdh-001 179668210-179687189 protein_coding
  ENSMUST00000131039 Sccpdh-002 179668260-179677515 retained_intron
  ENSMUST00000134287 Sccpdh-004 179668210-179687189 nonsense_mediated_decay
  ENSMUST00000143936 Sccpdh-005 179680547-179684491 protein_coding
  ENSMUST00000144480 Sccpdh-006 179680518-179686825 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040538ENSMUST00000134287
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040538 13.729±1.04 N/A 17.309±3.44 18.530±5.95 5.654±2.78 0.994±0.25 22.632±5.60 9.509±1.32 2.918±1.57 7.452±2.05 15.256±0.90 7.578±5.16 11.764±8.95 151.606±59.93
ENSMUST00000134287 2.724±0.00 37.574±15.47 N/A N/A 8.912±4.23 3.837±1.70 N/A 2.521±1.20 0.952±0.32 4.532±0.56 N/A 12.836±5.87 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AM CIL_0007AM_0003 CGP 1:179546370-179687189

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005811 IEA lipid particle
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016491 IEA oxidoreductase activity
GO:0030496 IEA midbody
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024564 sccpdhb saccharopine dehydrogenase b protein_coding Danio_rerio
ENSDARG00000075053 SCCPDH (2 of 3) saccharopine dehydrogenase (putative) protein_coding Danio_rerio
ENSDARG00000075766 sccpdha saccharopine dehydrogenase a protein_coding Danio_rerio
ENSG00000143653 SCCPDH saccharopine dehydrogenase (putative) protein_coding Homo_sapiens

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