C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4932438H23 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039851 4932438H23Rik 10090 - 16:91053935-91095122 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035689 4932438H23Rik-001 91053935-91069145 protein_coding
  ENSMUST00000114076 4932438H23Rik-002 91053935-91069145 protein_coding
  ENSMUST00000146047 4932438H23Rik-003 91055838-91095122 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035689ENSMUST00000114076ENSMUST00000146047
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035689 0.219±0.13 N/A 0.058±0.00 0.141±0.03 0.322±0.00 N/A 0.045±0.02 0.027±0.01 0.040±0.00 N/A 0.355±0.25 0.010±0.00 4.214±2.55
ENSMUST00000114076 0.125±0.02 0.038±0.00 0.159±0.00 0.090±0.07 0.315±0.00 0.042±0.02 0.048±0.01 0.017±0.01 0.060±0.03 0.023±0.01 N/A 0.062±0.00 2.721±0.16
ENSMUST00000146047 N/A N/A N/A N/A 0.941±0.43 N/A 0.214±0.05 0.015±0.00 0.156±0.06 0.030±0.00 1.250±0.95 0.086±0.00 7.624±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411
CIL_0007UY CIL_0007UY_0002 VISTA 16:90990868-91593443
CIL_0003TV CIL_0003TV_0002 CGP 16:91014037-91095122

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000205929 C21orf62 chromosome 21 open reading frame 62 protein_coding Homo_sapiens

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