C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat domain 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040389 Wdr47 10090 + 3:108591279-108645719 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051145 Wdr47-001 108591279-108645719 protein_coding
  ENSMUST00000123568 Wdr47-005 108618853-108624655 processed_transcript
  ENSMUST00000124731 Wdr47-002 108591352-108618656 processed_transcript
  ENSMUST00000133453 Wdr47-004 108619234-108627545 processed_transcript
  ENSMUST00000139626 Wdr47-003 108591391-108614495 protein_coding
  ENSMUST00000144325 Wdr47-006 108627194-108637922 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051145ENSMUST00000123568ENSMUST00000124731ENSMUST00000144325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051145 1.779±0.29 1.866±0.00 4.643±0.72 27.619±5.47 1.326±0.22 1.099±0.00 1.168±0.68 1.800±0.27 0.665±0.41 2.257±0.66 1.079±0.28 3.214±0.78 3.980±0.41 4.865±2.22
ENSMUST00000123568 N/A N/A N/A N/A N/A N/A N/A N/A 0.380±0.00 N/A N/A N/A N/A N/A
ENSMUST00000124731 N/A 3.192±0.36 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144325 N/A N/A N/A N/A N/A N/A N/A N/A 0.357±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0007275 IEA multicellular organismal development
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059685 wdr47b WD repeat domain 47b protein_coding Danio_rerio
ENSDARG00000078136 wdr47a WD repeat domain 47a protein_coding Danio_rerio
ENSG00000085433 WDR47 WD repeat domain 47 protein_coding Homo_sapiens

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