C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PR domain containing 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040478 Prdm13 10090 - 4:21677480-21685963 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076206 Prdm13-001 21677481-21685783 protein_coding
  ENSMUST00000095141 Prdm13-201 21677481-21685963 protein_coding
  ENSMUST00000139255 Prdm13-002 21679665-21685783 processed_transcript
  ENSMUST00000139568 Prdm13-005 21682312-21685845 retained_intron
  ENSMUST00000144160 Prdm13-004 21677480-21685963 processed_transcript
  ENSMUST00000149516 Prdm13-003 21679747-21685781 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLiverLungOvaryTestisENSMUST00000076206ENSMUST00000095141ENSMUST00000139255ENSMUST00000139568ENSMUST00000149516
Transcript ID Adrenal Brain Liver Lung Ovary Testis
ENSMUST00000076206 0.009±0.00 0.281±0.18 N/A 0.007±0.00 0.052±0.03 N/A
ENSMUST00000095141 N/A 0.141±0.02 N/A N/A N/A N/A
ENSMUST00000139255 N/A N/A 0.025±0.00 N/A N/A 0.055±0.00
ENSMUST00000139568 N/A N/A N/A N/A N/A 0.024±0.00
ENSMUST00000149516 N/A N/A 0.030±0.00 N/A 0.165±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008168 IEA methyltransferase activity
GO:0022008 IDA neurogenesis
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078701 prdm13 PR domain containing 13 protein_coding Danio_rerio
ENSG00000112238 PRDM13 PR domain containing 13 protein_coding Homo_sapiens

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