C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RRP9, small subunit (SSU) processome component, homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041506 Rrp9 10090 + 9:106475963-106485424 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047721 Rrp9-001 106477269-106485424 protein_coding
  ENSMUST00000123464 Rrp9-004 106475963-106481873 processed_transcript
  ENSMUST00000125630 Rrp9-002 106477318-106485416 retained_intron
  ENSMUST00000127400 Rrp9-003 106477330-106477989 retained_intron
  ENSMUST00000131618 Rrp9-006 106484464-106485424 retained_intron
  ENSMUST00000156796 Rrp9-005 106480800-106481649 retained_intron
  ENSMUST00000185336 Rrp9-007 106483854-106485422 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047721ENSMUST00000123464ENSMUST00000127400
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047721 12.468±0.00 17.977±3.46 13.405±1.66 11.077±3.99 19.325±0.12 11.295±2.70 5.607±0.80 7.629±1.54 10.660±5.84 13.532±2.04 10.770±1.30 16.535±6.25 10.914±7.03 7.625±2.84
ENSMUST00000123464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.809±0.00
ENSMUST00000127400 N/A N/A N/A 20.573±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 23.913±8.77 23.133±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NT CIL_0008NT_0002 VISTA 9:106082995-106685663
CIL_00087C CIL_00087C_0002 VISTA 9:106116951-106718793

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041991 rrp9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) protein_coding Danio_rerio
ENSG00000114767 RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) protein_coding Homo_sapiens

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