C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RRP9, small subunit (SSU) processome component, homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047721 Rrp9-001 ENSMUSG00000041506 10090 + 9:106477269-106485424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047721 12.468±0.00 17.977±3.46 13.405±1.66 11.077±3.99 19.325±0.12 11.295±2.70 5.607±0.80 7.629±1.54 10.660±5.84 13.532±2.04 10.770±1.30 16.535±6.25 10.914±7.03 7.625±2.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NT CIL_0008NT_0002 VISTA 9:106082995-106685663
CIL_00087C CIL_00087C_0002 VISTA 9:106116951-106718793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000232888 RRP9-001 protein_coding Homo_sapiens 0 1714

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