C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proline rich membrane anchor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041669 Prima1 10090 - 12:103196908-103242150 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074416 Prima1-001 103196908-103242150 protein_coding
  ENSMUST00000123655 Prima1-003 103196908-103202884 processed_transcript
  ENSMUST00000127843 Prima1-004 103196908-103242146 nonsense_mediated_decay
  ENSMUST00000155547 Prima1-005 103235639-103236024 processed_transcript
  ENSMUST00000156176 Prima1-002 103197268-103242128 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000074416ENSMUST00000123655ENSMUST00000127843ENSMUST00000156176
Transcript ID Adrenal Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074416 0.178±0.03 N/A 0.787±0.00 0.202±0.00 0.058±0.04 0.206±0.04 0.318±0.00 1.024±0.51 N/A 0.127±0.03
ENSMUST00000123655 1.039±0.00 N/A N/A 0.306±0.00 0.025±0.01 N/A N/A 0.233±0.00 0.069±0.00 0.114±0.00
ENSMUST00000127843 N/A N/A 0.686±0.00 0.152±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000156176 N/A 3.791±0.00 N/A 0.141±0.00 N/A N/A N/A 0.286±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000BG CIL_0000BG_0002 CGP 12:103196908-103317065

Gene Ontology
GO IDEvidence TypeGO Description
GO:0019899 IPI enzyme binding
GO:0031226 IDA intrinsic component of plasma membrane
GO:0043495 IPI protein anchor
GO:0051649 IDA establishment of localization in cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077377 PRIMA1 proline rich membrane anchor 1 protein_coding Danio_rerio
ENSG00000175785 PRIMA1 proline rich membrane anchor 1 protein_coding Homo_sapiens

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