C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 46
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042766 Trim46 10090 - 3:89234177-89246309 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041022 Trim46-001 89234177-89245897 protein_coding
  ENSMUST00000090924 Trim46-003 89234177-89245199 protein_coding
  ENSMUST00000107464 Trim46-004 89234177-89245013 protein_coding
  ENSMUST00000125952 Trim46-006 89244294-89246309 protein_coding
  ENSMUST00000139419 Trim46-005 89234835-89239345 processed_transcript
  ENSMUST00000143637 Trim46-002 89234868-89245872 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonPlacentaENSMUST00000041022ENSMUST00000090924ENSMUST00000107464ENSMUST00000139419ENSMUST00000143637
Transcript ID Adipose Brain Breast Colon Placenta
ENSMUST00000041022 1.239±0.00 11.747±5.75 N/A N/A N/A
ENSMUST00000090924 2.927±0.00 10.693±3.89 2.132±0.56 N/A 3.806±0.00
ENSMUST00000107464 N/A 4.804±0.00 N/A N/A N/A
ENSMUST00000139419 N/A N/A N/A 21.031±4.78 N/A
ENSMUST00000143637 N/A 16.974±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064S CIL_00064S_0002 CGP 3:89234177-89249906

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012367 TRIM46 (1 of 2) tripartite motif containing 46 protein_coding Danio_rerio
ENSDARG00000058649 trim46b tripartite motif containing 46b protein_coding Danio_rerio
ENSG00000163462 TRIM46 tripartite motif containing 46 protein_coding Homo_sapiens

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