C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046387 Pcdhb17 10090 + 18:37485021-37488289 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053856 Pcdhb17-201 37485021-37488289 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053856
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053856 3.800±1.45 3.291±0.15 3.318±0.38 3.404±1.32 2.666±1.26 2.242±0.12 1.212±0.28 1.191±0.22 0.122±0.08 3.222±1.28 0.515±0.05 2.998±2.23 0.106±0.11 0.173±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000T CGP 18:37477768-37488289
CIL_00062S CIL_00062S_000Q CGP 18:37485021-37494503

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000272674 PCDHB16 protocadherin beta 16 protein_coding Homo_sapiens

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