C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053856 Pcdhb17-201 ENSMUSG00000046387 10090 + 18:37485021-37488289 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053856
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053856 3.800±1.45 3.291±0.15 3.318±0.38 3.404±1.32 2.666±1.26 2.242±0.12 1.212±0.28 1.191±0.22 0.122±0.08 3.222±1.28 0.515±0.05 2.998±2.23 0.106±0.11 0.173±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000T CGP 18:37477768-37488289
CIL_00062S CIL_00062S_000Q CGP 18:37485021-37494503

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194152 PCDHB4-001 protein_coding Homo_sapiens 0 976
ENST00000194155 PCDHB2-001 protein_coding Homo_sapiens 0 992
ENST00000231130 PCDHB3-001 protein_coding Homo_sapiens 0 946
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 0 1011
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 979
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 1092
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 898
ENST00000239449 PCDHB14-001 protein_coding Homo_sapiens 0 852
ENST00000239450 PCDHB12-001 protein_coding Homo_sapiens 0 889
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 1140
ENST00000354757 PCDHB11-001 protein_coding Homo_sapiens 0 865
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 898
ENST00000524813 PCDHB18-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 815
ENST00000526308 PCDHB18-002 processed_transcript Homo_sapiens 0 815
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 870
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 1057
ENST00000570871 PCDHB19P-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 601
ENST00000609684 PCDHB16-001 protein_coding Homo_sapiens 0 1740
ENST00000622947 PCDHB2-003 protein_coding Homo_sapiens 0 946
ENST00000622978 PCDHB12-003 protein_coding Homo_sapiens 0 889
ENST00000622991 PCDHB6-002 protein_coding Homo_sapiens 0 1011
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 870
ENST00000623478 PCDHB4-002 processed_transcript Homo_sapiens 0 815
ENST00000624887 PCDHB11-002 protein_coding Homo_sapiens 0 865
ENST00000624896 PCDHB14-003 protein_coding Homo_sapiens 0 852
ENST00000624949 PCDHB12-002 protein_coding Homo_sapiens 0 889
ENST00000625044 PCDHB16-002 protein_coding Homo_sapiens 0 582
ENST00000625133 PCDHB19P-002 processed_transcript Homo_sapiens 0 601

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