C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 15
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047033 Pcdhb15 10090 + 18:37473546-37476340 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050034 Pcdhb15-201 37473546-37476340 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050034
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050034 1.174±0.48 0.432±0.09 0.590±0.14 0.877±0.06 0.583±0.18 0.446±0.08 0.246±0.05 0.300±0.03 0.033±0.02 0.829±0.14 0.059±0.02 1.306±0.74 0.030±0.02 0.077±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000J CGP 18:37447657-37476340
CIL_00062S CIL_00062S_000R CGP 18:37473546-37483035

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000113212 PCDHB7 protocadherin beta 7 protein_coding Homo_sapiens

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