C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050034 Pcdhb15-201 ENSMUSG00000047033 10090 + 18:37473546-37476340 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050034
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050034 1.174±0.48 0.432±0.09 0.590±0.14 0.877±0.06 0.583±0.18 0.446±0.08 0.246±0.05 0.300±0.03 0.033±0.02 0.829±0.14 0.059±0.02 1.306±0.74 0.030±0.02 0.077±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000J CGP 18:37447657-37476340
CIL_00062S CIL_00062S_000R CGP 18:37473546-37483035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194152 PCDHB4-001 protein_coding Homo_sapiens 0 835
ENST00000194155 PCDHB2-001 protein_coding Homo_sapiens 0 896
ENST00000231130 PCDHB3-001 protein_coding Homo_sapiens 0 819
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 0 782
ENST00000231137 PCDHB7-001 protein_coding Homo_sapiens 0 1746
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 821
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 736
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 865
ENST00000239449 PCDHB14-001 protein_coding Homo_sapiens 0 837
ENST00000239450 PCDHB12-001 protein_coding Homo_sapiens 0 828
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 763
ENST00000354757 PCDHB11-001 protein_coding Homo_sapiens 0 822
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 865
ENST00000524813 PCDHB18-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 776
ENST00000526308 PCDHB18-002 processed_transcript Homo_sapiens 0 776
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 760
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 861
ENST00000570871 PCDHB19P-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 553
ENST00000609684 PCDHB16-001 protein_coding Homo_sapiens 0 789
ENST00000622947 PCDHB2-003 protein_coding Homo_sapiens 0 824
ENST00000622978 PCDHB12-003 protein_coding Homo_sapiens 0 821
ENST00000622991 PCDHB6-002 protein_coding Homo_sapiens 0 782
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 760
ENST00000623478 PCDHB4-002 processed_transcript Homo_sapiens 0 697
ENST00000624887 PCDHB11-002 protein_coding Homo_sapiens 0 813
ENST00000624896 PCDHB14-003 protein_coding Homo_sapiens 0 782
ENST00000624949 PCDHB12-002 protein_coding Homo_sapiens 0 821
ENST00000625044 PCDHB16-002 protein_coding Homo_sapiens 0 435
ENST00000625133 PCDHB19P-002 processed_transcript Homo_sapiens 0 553

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