C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 2810006K23 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047635 2810006K23Rik 10090 + 5:124328089-124341844 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077376 2810006K23Rik-001 124328098-124341844 protein_coding
  ENSMUST00000111477 2810006K23Rik-002 124328089-124340122 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077376ENSMUST00000111477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077376 4.797±0.50 5.065±0.39 3.790±0.08 3.377±0.99 4.083±1.02 2.876±0.48 4.011±0.20 4.499±0.24 3.635±0.45 2.645±0.44 3.377±0.33 5.834±1.09 4.656±1.19 2.260±0.93
ENSMUST00000111477 0.589±0.02 0.618±0.18 0.587±0.00 0.681±0.12 0.556±0.15 0.357±0.13 N/A N/A 0.347±0.00 0.291±0.00 N/A 0.674±0.17 N/A 1.003±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0003J4 CIL_0003J4_0002 CGP 5:124250959-124341844
CIL_0003J7 CIL_0003J7_0002 CGP 5:124328089-124354671

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003747 IEA translation release factor activity
GO:0005575 ND cellular_component
GO:0005739 IEA mitochondrion
GO:0006415 IEA translational termination
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059447 C5H12orf65 (1 of 2) chromosome 12 open reading frame 65 protein_coding Danio_rerio
ENSDARG00000097803 C5H12orf65 (2 of 2) chromosome 12 open reading frame 65 protein_coding Danio_rerio
ENSG00000130921 C12orf65 chromosome 12 open reading frame 65 protein_coding Homo_sapiens

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