C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048100 Taf13 10090 + 3:108571698-108583222 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056292 Taf13-003 108571699-108582069 processed_transcript
  ENSMUST00000131814 Taf13-002 108571698-108581370 processed_transcript
  ENSMUST00000139603 Taf13-004 108571711-108573304 processed_transcript
  ENSMUST00000143054 Taf13-001 108571699-108583222 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056292ENSMUST00000131814ENSMUST00000139603ENSMUST00000143054
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056292 3.110±1.14 1.993±0.54 2.175±0.41 6.727±3.18 2.729±1.35 1.938±0.50 2.825±0.49 3.398±0.44 3.171±1.12 3.353±0.95 4.585±2.79 3.254±3.73 9.325±2.53 3.618±0.72
ENSMUST00000131814 N/A N/A N/A N/A 1.954±0.00 1.588±0.00 N/A N/A N/A 1.093±0.00 N/A 1.113±0.29 N/A 5.980±2.25
ENSMUST00000139603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.557±0.00 N/A 28.160±0.00
ENSMUST00000143054 0.306±0.03 N/A 2.686±0.12 1.746±0.07 0.275±0.04 0.281±0.00 0.340±0.11 0.334±0.05 1.153±0.53 0.548±0.11 0.823±0.10 0.537±0.22 3.010±0.95 0.904±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 IEA transcription factor TFIID complex
GO:0005730 IEA nucleolus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0008022 IEA protein C-terminus binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070834 taf13 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSG00000197780 TAF13 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa protein_coding Homo_sapiens

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