C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 260
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049421 Zfp260 10090 + 7:30094777-30107622 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050735 Zfp260-001 30094794-30107622 protein_coding
  ENSMUST00000108200 Zfp260-002 30095185-30107614 protein_coding
  ENSMUST00000123095 Zfp260-003 30094777-30104291 processed_transcript
  ENSMUST00000130526 Zfp260-005 30095169-30104759 protein_coding
  ENSMUST00000134365 Zfp260-006 30095178-30107619 processed_transcript
  ENSMUST00000149302 Zfp260-004 30095162-30100118 retained_intron
  ENSMUST00000182136 Zfp260-007 30098157-30100101 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050735ENSMUST00000108200ENSMUST00000123095ENSMUST00000134365ENSMUST00000182136
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050735 2.137±0.88 2.723±1.04 3.769±0.69 3.847±0.27 1.717±0.39 3.619±1.34 1.543±0.10 1.071±0.25 1.416±0.56 2.933±0.58 2.276±0.82 3.422±1.23 2.375±0.94 0.604±0.22
ENSMUST00000108200 7.065±2.97 1.155±0.21 8.335±0.00 10.997±1.20 6.006±1.82 2.788±1.29 3.545±0.88 2.897±1.20 1.895±0.67 4.479±0.97 4.584±0.29 8.577±4.82 5.349±0.42 0.686±0.21
ENSMUST00000123095 N/A 3.387±0.64 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134365 8.608±0.00 4.168±1.24 N/A N/A N/A 3.084±0.00 N/A 4.348±0.20 3.415±0.31 N/A N/A 10.797±0.00 N/A 3.043±0.97
ENSMUST00000182136 N/A 0.583±0.11 N/A N/A N/A N/A N/A N/A 0.752±0.07 N/A N/A 1.950±0.32 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000465 CIL_000465_0002 CGP 7:30077337-30107622

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IBA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086417 CABZ01069022.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000087185 CABZ01069006.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090209 si:dkey-25i10.1 si:dkey-25i10.1 protein_coding Danio_rerio
ENSDARG00000095121 CR382372.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000096141 zgc:173624 zgc:173624 protein_coding Danio_rerio
ENSDARG00000096828 si:ch73-144d13.7 si:ch73-144d13.7 protein_coding Danio_rerio
ENSDARG00000097620 si:ch211-210b2.1 si:ch211-210b2.1 protein_coding Danio_rerio
ENSDARG00000098031 si:ch73-144d13.8 si:ch73-144d13.8 protein_coding Danio_rerio
ENSG00000254004 ZNF260 zinc finger protein 260 protein_coding Homo_sapiens

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