C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H6 homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050100 Hmx2 10090 + 7:131548773-131556589 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051997 Hmx2-001 131554061-131556589 protein_coding
  ENSMUST00000183219 Hmx2-002 131548773-131556589 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverOvaryPlacentaENSMUST00000051997ENSMUST00000183219
Transcript ID Brain Colon Kidney Liver Ovary Placenta
ENSMUST00000051997 0.168±0.00 N/A N/A N/A N/A 0.083±0.00
ENSMUST00000183219 0.881±0.06 0.448±0.22 3.529±0.62 0.006±0.00 0.073±0.00 0.016±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_0008DB CIL_0008DB_0002 VISTA 7:131163946-131765852
CIL_0009A3 CIL_0009A3_0002 VISTA 7:131196657-131797909
CIL_0007QE CIL_0007QE_0002 VISTA 7:131249727-131851322
CIL_00099C CIL_00099C_0002 VISTA 7:131412593-132013659
CIL_0007LX CIL_0007LX_0002 UCNEbase 7:131465048-131797301
CIL_0008SI CIL_0008SI_0002 VISTA 7:131477679-132078766
CIL_00011S CIL_00011S_0002 CGP 7:131542867-131556589
CIL_00011T CIL_00011T_0002 CGP 7:131548773-131571898

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IGI brain development
GO:0008284 IMP positive regulation of cell proliferation
GO:0030154 IEA cell differentiation
GO:0042472 IMP inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0048026 IMP positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070954 hmx2 H6 family homeobox 2 protein_coding Danio_rerio
ENSG00000188816 HMX2 H6 family homeobox 2 protein_coding Homo_sapiens

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