C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: otopetrin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051596 Otop1 10090 + 5:38275972-38304217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000063136 Otop1-201 38275972-38304209 protein_coding
  ENSMUST00000114099 Otop1-202 38277404-38304208 protein_coding
  ENSMUST00000185357 Otop1-001 38277404-38304217 processed_transcript
  ENSMUST00000187863 Otop1-002 38286023-38303377 processed_transcript

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000063136ENSMUST00000114099ENSMUST00000185357ENSMUST00000187863
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000063136 N/A N/A 0.007±0.00 N/A 1.607±0.00 0.607±0.00 N/A 0.003±0.00 0.232±0.00 0.024±0.01 0.172±0.13 0.752±0.00
ENSMUST00000114099 4.541±2.60 8.677±5.35 0.014±0.01 N/A 8.263±2.43 1.557±0.45 1.679±0.43 0.001±0.00 0.963±0.40 0.027±0.02 0.374±0.27 0.582±0.24
ENSMUST00000185357 N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A 0.098±0.00 0.014±0.01 0.177±0.08 0.280±0.00
ENSMUST00000187863 N/A N/A N/A 0.017±0.00 N/A 0.343±0.10 N/A 0.008±0.00 N/A N/A 0.167±0.05 1.268±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0009590 IMP detection of gravity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0031214 IEA biomineral tissue development
GO:0042472 IMP inner ear morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021566 OTOP1 otopetrin 1 protein_coding Danio_rerio
ENSG00000163982 OTOP1 otopetrin 1 protein_coding Homo_sapiens

Loading