C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA C130026I21 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052477 C130026I21Rik 10090 - 1:84992690-85270566 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064341 C130026I21Rik-002 85246670-85270566 protein_coding
  ENSMUST00000093506 C130026I21Rik-001 85246344-85270543 protein_coding
  ENSMUST00000159114 C130026I21Rik-005 84992690-85246397 processed_transcript
  ENSMUST00000159582 C130026I21Rik-007 85245640-85270143 protein_coding
  ENSMUST00000161267 C130026I21Rik-011 85112267-85270178 protein_coding
  ENSMUST00000161685 C130026I21Rik-003 85241286-85254548 protein_coding
  ENSMUST00000162421 C130026I21Rik-012 85112418-85262070 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064341ENSMUST00000093506ENSMUST00000159114ENSMUST00000159582ENSMUST00000161267ENSMUST00000161685ENSMUST00000162421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064341 N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A 0.071±0.04 N/A N/A N/A N/A N/A
ENSMUST00000093506 0.156±0.04 0.182±0.10 6.217±3.03 N/A 0.434±0.03 0.143±0.03 0.050±0.01 0.108±0.04 0.060±0.03 0.204±0.00 0.015±0.00 0.485±0.00 0.319±0.21 0.043±0.00
ENSMUST00000159114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A
ENSMUST00000159582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.084±2.40 N/A
ENSMUST00000161267 N/A N/A N/A N/A N/A N/A 0.061±0.00 0.236±0.07 0.102±0.06 N/A 0.241±0.20 N/A 0.206±0.08 N/A
ENSMUST00000161685 0.267±0.07 0.299±0.06 17.514±8.70 0.296±0.15 1.235±0.00 0.246±0.20 0.155±0.00 0.208±0.05 0.087±0.03 0.527±0.10 N/A 1.981±1.21 0.488±0.00 0.142±0.10
ENSMUST00000162421 N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 N/A N/A N/A N/A N/A 0.126±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0006 CGP 1:84992690-85270566

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038133 zgc:113411 zgc:113411 protein_coding Danio_rerio
ENSDARG00000055359 BX569789.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090449 BX569789.4 Uncharacterized protein protein_coding Danio_rerio
ENSG00000079263 SP140 SP140 nuclear body protein protein_coding Homo_sapiens

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