C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SP140 nuclear body protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079263 SP140 9606 + 2:230203110-230313215 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343805 SP140-009 230225745-230313070 protein_coding
  ENST00000373645 SP140-003 230225764-230239087 protein_coding
  ENST00000392045 SP140-002 230225731-230313212 protein_coding
  ENST00000417495 SP140-004 230225742-230313214 protein_coding
  ENST00000420434 SP140-201 230225730-230313215 protein_coding
  ENST00000441657 SP140-014 230203624-230214159 processed_transcript
  ENST00000456542 SP140-015 230203110-230234966 protein_coding
  ENST00000473711 SP140-008 230225792-230237614 retained_intron
  ENST00000476126 SP140-006 230269898-230288097 retained_intron
  ENST00000479539 SP140-005 230310141-230311523 retained_intron
  ENST00000486750 SP140-007 230294289-230310388 retained_intron
  ENST00000538494 SP140-012 230230414-230238927 processed_transcript
  ENST00000543928 SP140-010 230225749-230238519 retained_intron
  ENST00000544128 SP140-011 230230411-230239067 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungTestisENST00000392045
Transcript ID Adrenal Breast Colon Lung Testis
ENST00000392045 8.220±0.00 0.893±0.00 1.394±0.00 2.473±0.00 0.882±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0003 CGP 2:230167293-230313215
CIL_0004AU CIL_0004AU_0002 CGP 2:230203110-230403732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 TAS:IEA nucleus
GO:0005635 TAS nuclear envelope
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006952 TAS defense response
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038133 zgc:113411 zgc:113411 protein_coding Danio_rerio
ENSDARG00000055359 BX569789.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090449 BX569789.4 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000052477 C130026I21Rik RIKEN cDNA C130026I21 gene protein_coding Mus_musculus
ENSMUSG00000070031 Sp140 Sp140 nuclear body protein protein_coding Mus_musculus
ENSMUSG00000079190 AC133103.1 protein_coding Mus_musculus
ENSMUSG00000079192 AC125149.1 protein_coding Mus_musculus
ENSMUSG00000079794 AC125149.2 protein_coding Mus_musculus
ENSMUSG00000089844 A530032D15Rik RIKEN cDNA A530032D15Rik gene protein_coding Mus_musculus
ENSMUSG00000095500 AC132444.5 protein_coding Mus_musculus

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