C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWT1 RNA endoribonuclease homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052748 Swt1 10090 - 1:151367699-151428455 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064771 Swt1-001 151367699-151428455 protein_coding
  ENSMUST00000111883 Swt1-003 151368364-151428436 nonsense_mediated_decay
  ENSMUST00000124880 Swt1-008 151370384-151372364 retained_intron
  ENSMUST00000129939 Swt1-005 151401123-151423555 protein_coding
  ENSMUST00000131312 Swt1-002 151416319-151423344 retained_intron
  ENSMUST00000138095 Swt1-004 151411158-151412979 retained_intron
  ENSMUST00000139244 Swt1-007 151379392-151384516 retained_intron
  ENSMUST00000141977 Swt1-006 151391436-151403027 protein_coding
  ENSMUST00000185247 Swt1-010 151427024-151428455 retained_intron
  ENSMUST00000189595 Swt1-009 151401758-151404607 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064771ENSMUST00000111883ENSMUST00000129939ENSMUST00000131312ENSMUST00000138095ENSMUST00000189595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064771 1.264±0.59 0.644±0.00 4.134±1.13 2.736±1.32 1.683±0.61 1.212±0.13 0.725±0.32 2.132±0.76 3.617±2.58 4.256±1.46 0.757±0.19 2.429±0.95 9.959±4.59 4.955±1.52
ENSMUST00000111883 N/A 1.333±0.42 N/A N/A N/A N/A 0.500±0.00 N/A 0.553±0.00 N/A N/A 0.669±0.00 N/A 3.019±0.19
ENSMUST00000129939 N/A N/A N/A N/A N/A N/A 1.147±0.00 N/A N/A N/A N/A 4.909±1.56 N/A 5.922±0.00
ENSMUST00000131312 N/A 0.284±0.01 N/A N/A N/A 0.498±0.00 N/A 0.383±0.00 N/A N/A N/A 0.565±0.13 N/A N/A
ENSMUST00000138095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.979±6.65 N/A
ENSMUST00000189595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.040±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D4 CIL_0001D4_0002 CGP 1:151344477-151428455

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000094010 swt1 SWT1 RNA endoribonuclease homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000116668 SWT1 SWT1 RNA endoribonuclease homolog (S. cerevisiae) protein_coding Homo_sapiens

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