C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium/calmodulin-dependent protein kinase II, delta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053819 Camk2d 10090 + 3:126596302-126844913 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066452 Camk2d-015 126597440-126842761 protein_coding
  ENSMUST00000066466 Camk2d-001 126597007-126844912 protein_coding
  ENSMUST00000106399 Camk2d-014 126597440-126842865 protein_coding
  ENSMUST00000106400 Camk2d-018 126597331-126843703 protein_coding
  ENSMUST00000106401 Camk2d-008 126597343-126843794 protein_coding
  ENSMUST00000106402 Camk2d-002 126596951-126844913 protein_coding
  ENSMUST00000129293 Camk2d-006 126597399-126843684 retained_intron
  ENSMUST00000131156 Camk2d-005 126597341-126685392 retained_intron
  ENSMUST00000131869 Camk2d-003 126597035-126843828 nonsense_mediated_decay
  ENSMUST00000134466 Camk2d-010 126597010-126811877 nonsense_mediated_decay
  ENSMUST00000134987 Camk2d-009 126778168-126784771 retained_intron
  ENSMUST00000143383 Camk2d-013 126596302-126684688 processed_transcript
  ENSMUST00000145454 Camk2d-004 126597020-126842710 nonsense_mediated_decay
  ENSMUST00000147043 Camk2d-011 126784014-126808485 retained_intron
  ENSMUST00000149311 Camk2d-007 126597010-126769135 retained_intron
  ENSMUST00000163226 Camk2d-017 126597005-126818801 protein_coding
  ENSMUST00000167417 Camk2d-019 126801717-126841548 protein_coding
  ENSMUST00000167985 Camk2d-020 126798238-126840182 protein_coding
  ENSMUST00000169051 Camk2d-012 126597010-126840459 protein_coding
  ENSMUST00000170149 Camk2d-022 126805862-126842893 protein_coding
  ENSMUST00000171289 Camk2d-016 126597440-126842761 protein_coding
  ENSMUST00000171950 Camk2d-021 126778740-126810648 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066466ENSMUST00000106400ENSMUST00000106401ENSMUST00000106402ENSMUST00000129293ENSMUST00000131869ENSMUST00000145454ENSMUST00000149311ENSMUST00000163226ENSMUST00000169051
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066466 10.902±3.47 16.763±3.30 36.994±2.36 4.713±0.81 7.778±0.99 9.310±3.35 20.074±1.09 3.351±0.56 1.214±0.78 9.623±0.92 4.044±1.36 9.707±2.05 6.710±3.47 0.402±0.22
ENSMUST00000106400 9.583±0.72 N/A N/A N/A 7.475±2.65 N/A 14.968±1.70 3.674±0.40 0.769±0.16 8.098±0.31 N/A 4.510±0.44 5.614±1.71 0.761±0.21
ENSMUST00000106401 N/A N/A N/A 12.394±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106402 8.820±0.01 28.954±11.06 17.146±0.14 9.477±0.39 5.508±1.55 12.407±2.78 5.107±0.36 3.229±1.48 0.820±0.14 9.254±0.25 2.861±0.60 14.801±6.48 2.422±0.12 N/A
ENSMUST00000129293 N/A N/A N/A N/A N/A N/A N/A N/A 0.431±0.00 N/A N/A N/A N/A N/A
ENSMUST00000131869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.415±0.00 N/A N/A
ENSMUST00000145454 N/A N/A N/A N/A N/A N/A N/A N/A 0.339±0.00 N/A N/A N/A N/A N/A
ENSMUST00000149311 N/A 10.381±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163226 N/A N/A N/A N/A N/A N/A N/A N/A 0.332±0.07 N/A N/A N/A N/A N/A
ENSMUST00000169051 N/A 26.429±13.25 N/A N/A N/A 9.897±2.04 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FA CIL_0000FA_0002 CGP 3:126363827-126844913
CIL_00038U CIL_00038U_0002 CGP 3:126596302-127499259

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0002028 IDA regulation of sodium ion transport
GO:0004674 IMP protein serine/threonine kinase activity
GO:0004683 IEA calmodulin-dependent protein kinase activity
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005954 TAS calcium- and calmodulin-dependent protein kinase complex
GO:0006468 ISS protein phosphorylation
GO:0006816 IMP calcium ion transport
GO:0010613 ISS positive regulation of cardiac muscle hypertrophy
GO:0014704 IDA intercalated disc
GO:0016529 IDA sarcoplasmic reticulum
GO:0018105 IDA peptidyl-serine phosphorylation
GO:0018107 ISS peptidyl-threonine phosphorylation
GO:0030315 IDA T-tubule
GO:0031594 IDA neuromuscular junction
GO:0034704 IDA calcium channel complex
GO:0043025 IDA neuronal cell body
GO:0043194 IDA axon initial segment
GO:0044325 IPI ion channel binding
GO:0046777 IMP protein autophosphorylation
GO:0055119 ISS relaxation of cardiac muscle
GO:0060048 IDA cardiac muscle contraction
GO:0060341 ISS regulation of cellular localization
GO:0086003 ISS cardiac muscle cell contraction
GO:1901897 IGI regulation of relaxation of cardiac muscle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043010 camk2d1 calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1 protein_coding Danio_rerio

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