C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC055111
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054362 BC055111 10090 - 4:106590909-106617241 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067387 BC055111-002 106590909-106617241 nonsense_mediated_decay
  ENSMUST00000106788 BC055111-001 106591310-106617238 protein_coding
  ENSMUST00000126324 BC055111-003 106590909-106607395 nonsense_mediated_decay
  ENSMUST00000189032 BC055111-201 106590909-106617238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000067387ENSMUST00000106788ENSMUST00000126324ENSMUST00000189032
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000067387 0.007±0.00 0.027±0.02 0.023±0.00 0.003±0.00 0.005±0.00 0.011±0.01 0.019±0.00 0.018±0.00 0.195±0.01 N/A
ENSMUST00000106788 0.007±0.00 0.005±0.00 0.018±0.01 N/A 0.023±0.02 0.028±0.00 0.035±0.01 N/A 0.331±0.10 10.794±3.75
ENSMUST00000126324 N/A 0.029±0.00 N/A N/A N/A 0.144±0.00 N/A N/A 0.343±0.00 N/A
ENSMUST00000189032 0.007±0.00 0.047±0.03 0.033±0.01 0.017±0.00 0.043±0.04 0.021±0.01 0.050±0.03 0.025±0.01 0.805±0.58 12.058±4.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085J CIL_00085J_0002 VISTA 4:106564211-107167561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000162398 C1orf177 chromosome 1 open reading frame 177 protein_coding Homo_sapiens

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