C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA C030039L03 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057093 C030039L03Rik 10090 + 7:27689340-27706484 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076421 C030039L03Rik-201 27692502-27704067 protein_coding
  ENSMUST00000120004 C030039L03Rik-001 27689340-27706484 protein_coding
  ENSMUST00000124397 C030039L03Rik-003 27692477-27698994 retained_intron
  ENSMUST00000127200 C030039L03Rik-002 27691913-27693692 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076421ENSMUST00000120004ENSMUST00000124397ENSMUST00000127200
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076421 0.105±0.05 N/A N/A N/A 0.231±0.00 0.092±0.02 0.104±0.06 0.074±0.01 N/A 0.166±0.08 0.040±0.02 0.346±0.19 0.115±0.01 N/A
ENSMUST00000120004 0.139±0.02 0.046±0.00 0.528±0.06 2.203±0.50 0.177±0.06 0.119±0.09 0.038±0.00 0.087±0.03 0.109±0.07 0.109±0.05 0.079±0.03 0.322±0.20 0.177±0.08 0.948±0.18
ENSMUST00000124397 0.287±0.00 0.345±0.07 0.777±0.00 N/A 0.682±0.21 0.402±0.06 0.349±0.21 0.456±0.24 0.333±0.22 N/A 0.245±0.04 0.773±0.32 0.554±0.16 18.246±2.76
ENSMUST00000127200 0.202±0.00 0.475±0.16 N/A N/A 0.125±0.00 0.315±0.15 0.104±0.05 0.151±0.03 0.064±0.01 0.322±0.01 N/A 0.568±0.30 N/A 14.340±0.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0006355 IBA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076108 zgc:194336 zgc:194336 protein_coding Danio_rerio
ENSDARG00000088352 si:ch211-271g18.3 si:ch211-271g18.3 protein_coding Danio_rerio
ENSDARG00000089537 CABZ01079304.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090942 CABZ01054394.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000093134 CR388165.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000096851 si:dkey-111k8.6 si:dkey-111k8.6 protein_coding Danio_rerio
ENSG00000197782 ZNF780A zinc finger protein 780A protein_coding Homo_sapiens

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