C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA C030039L03 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120004 C030039L03Rik-001 ENSMUSG00000057093 10090 + 7:27689340-27706484 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120004
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120004 0.139±0.02 0.046±0.00 0.528±0.06 2.203±0.50 0.177±0.06 0.119±0.09 0.038±0.00 0.087±0.03 0.109±0.07 0.109±0.05 0.079±0.03 0.322±0.20 0.177±0.08 0.948±0.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0006355 IBA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270001 ZFP14-001 protein_coding Homo_sapiens 6e-28 132
ENST00000304239 ZNF420-002 protein_coding Homo_sapiens 2e-18 99
ENST00000337995 ZNF420-001 protein_coding Homo_sapiens 3e-18 99
ENST00000339503 ZNF573-201 protein_coding Homo_sapiens 6e-23 113
ENST00000340963 ZNF780A-201 protein_coding Homo_sapiens 0 204
ENST00000347077 ZNF546-001 protein_coding Homo_sapiens 0.0000000008 71
ENST00000357309 ZNF573-202 protein_coding Homo_sapiens 6e-23 113
ENST00000360357 ZNF461-002 protein_coding Homo_sapiens 0.0000000001 73
ENST00000392138 ZNF573-004 protein_coding Homo_sapiens 7e-23 113
ENST00000396893 ZNF461-003 nonsense_mediated_decay Homo_sapiens 0.0000000002 73
ENST00000450241 ZNF780A-001 protein_coding Homo_sapiens 0 204
ENST00000455521 ZNF780A-202 protein_coding Homo_sapiens 0 204
ENST00000536220 ZNF573-203 protein_coding Homo_sapiens 7e-23 113
ENST00000540605 ZNF461-005 processed_transcript Homo_sapiens 0.00000000009 73
ENST00000586155 ZNF573-006 nonsense_mediated_decay Homo_sapiens 7e-23 113
ENST00000588268 ZNF461-001 protein_coding Homo_sapiens 0.0000000001 73
ENST00000589632 ZNF573-008 nonsense_mediated_decay Homo_sapiens 7e-23 113
ENST00000590414 ZNF573-007 protein_coding Homo_sapiens 7e-23 113
ENST00000590487 ZNF461-004 retained_intron Homo_sapiens 0.00000000008 73
ENST00000594395 ZNF780A-008 protein_coding Homo_sapiens 0 200
ENST00000595687 ZNF780A-009 protein_coding Homo_sapiens 0 204
ENST00000600094 ZNF546-002 protein_coding Homo_sapiens 0.0000000006 71
ENST00000614133 ZNF461-201 protein_coding Homo_sapiens 0.00000000008 73
ENST00000618437 ZNF461-202 protein_coding Homo_sapiens 0.00000000004 73

Loading