C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 28A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059554 Ccdc28a 10090 - 10:18213676-18234998 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052648 Ccdc28a-002 18216784-18234978 protein_coding
  ENSMUST00000080860 Ccdc28a-001 18213676-18234996 protein_coding
  ENSMUST00000173243 Ccdc28a-003 18214078-18234998 protein_coding
  ENSMUST00000173962 Ccdc28a-004 18214058-18219614 protein_coding
  ENSMUST00000174592 Ccdc28a-006 18213682-18227473 protein_coding
  ENSMUST00000174631 Ccdc28a-005 18213775-18216335 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052648ENSMUST00000080860ENSMUST00000173243ENSMUST00000173962ENSMUST00000174592ENSMUST00000174631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052648 0.925±0.18 0.896±0.24 1.004±0.11 0.704±0.00 0.510±0.06 1.061±0.17 0.513±0.06 1.101±0.10 0.867±0.22 0.467±0.11 0.378±0.20 0.739±0.24 1.716±0.92 12.189±5.95
ENSMUST00000080860 0.567±0.00 N/A 5.189±1.07 1.592±0.46 N/A N/A 1.617±0.45 1.249±0.00 2.212±1.03 1.288±0.02 3.322±0.50 2.025±1.30 3.444±1.49 16.870±6.41
ENSMUST00000173243 N/A N/A N/A 6.825±0.00 N/A N/A N/A N/A N/A N/A N/A 4.162±0.00 2.767±0.00 20.874±0.00
ENSMUST00000173962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.262±0.00 N/A
ENSMUST00000174592 1.861±0.37 1.780±0.57 N/A 2.392±0.00 2.714±0.95 4.455±0.38 2.857±0.71 4.155±0.94 2.301±0.60 2.399±0.52 1.996±0.00 2.610±1.22 1.235±0.43 N/A
ENSMUST00000174631 5.260±1.28 8.471±1.41 4.366±0.00 4.571±0.00 6.675±2.53 15.562±0.81 7.320±2.63 11.917±2.44 6.585±1.38 6.178±2.59 N/A 6.439±2.02 5.098±0.00 22.632±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000528 CIL_000528_0002 CGP 10:18129022-18234998

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022983 ccdc28a coiled-coil domain containing 28A protein_coding Danio_rerio
ENSG00000024862 CCDC28A coiled-coil domain containing 28A protein_coding Homo_sapiens

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