C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L35A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060636 Rpl35a 10090 + 16:33056453-33060189 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078804 Rpl35a-001 33056453-33060189 protein_coding
  ENSMUST00000115075 Rpl35a-006 33057018-33060156 protein_coding
  ENSMUST00000115076 Rpl35a-005 33056806-33060175 protein_coding
  ENSMUST00000115078 Rpl35a-002 33056527-33060165 protein_coding
  ENSMUST00000115079 Rpl35a-004 33056466-33060176 protein_coding
  ENSMUST00000133785 Rpl35a-003 33056482-33060175 retained_intron
  ENSMUST00000137720 Rpl35a-007 33056524-33057530 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078804ENSMUST00000115075ENSMUST00000115078ENSMUST00000115079ENSMUST00000133785ENSMUST00000137720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078804 201.653±61.25 20.240±5.14 740.836±44.31 236.406±152.41 138.531±22.87 121.585±24.93 108.303±5.25 216.137±32.24 416.518±379.85 141.133±11.60 184.878±24.58 194.121±169.71 313.048±227.17 140.875±63.96
ENSMUST00000115075 N/A N/A N/A N/A N/A N/A N/A N/A 18.924±0.00 N/A N/A N/A N/A N/A
ENSMUST00000115078 N/A 8.778±0.90 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115079 N/A 4.577±0.00 N/A 5.775±0.00 N/A N/A N/A N/A 76.545±50.43 N/A 18.626±0.00 43.604±0.00 36.701±13.58 6.390±0.00
ENSMUST00000133785 N/A 1.558±0.43 N/A 0.361±0.00 2.101±0.00 2.464±0.00 N/A N/A 1.563±0.00 N/A N/A 4.037±0.69 N/A 0.273±0.00
ENSMUST00000137720 N/A 1.766±0.38 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C9 CIL_0006C9_0002 CGP 16:33015385-33060189
CIL_0006CA CIL_0006CA_0002 CGP 16:33056453-33127695

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0006364 IEA rRNA processing
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088030 rpl35a ribosomal protein L35a protein_coding Danio_rerio
ENSG00000182899 RPL35A ribosomal protein L35a protein_coding Homo_sapiens

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