C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L35a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182899 RPL35A 9606 + 3:197949987-197956610 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329092 RPL35A-005 197950193-197954147 processed_transcript
  ENST00000429437 RPL35A-007 197950206-197955817 nonsense_mediated_decay
  ENST00000439255 RPL35A-008 197950954-197955817 nonsense_mediated_decay
  ENST00000442341 RPL35A-006 197950557-197954120 protein_coding
  ENST00000448864 RPL35A-002 197950194-197955851 protein_coding
  ENST00000464167 RPL35A-001 197949987-197956610 protein_coding
  ENST00000474640 RPL35A-009 197953563-197955851 retained_intron
  ENST00000485439 RPL35A-004 197950190-197954451 retained_intron
  ENST00000496582 RPL35A-003 197950193-197951665 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329092ENST00000429437ENST00000442341ENST00000448864ENST00000464167ENST00000485439
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329092 N/A N/A N/A 31.519±0.00 N/A N/A 27.683±0.00 28.155±0.00 N/A 26.699±0.00 N/A 52.373±0.00 N/A N/A
ENST00000429437 208.512±0.00 321.452±0.00 3.882±0.00 N/A 176.607±0.00 163.599±144.66 104.185±0.00 92.436±0.00 65.831±0.00 190.658±0.00 70.999±53.49 906.267±0.00 N/A 147.278±0.00
ENST00000442341 N/A N/A N/A N/A 62.819±0.00 27.162±0.00 20.692±0.00 38.294±0.00 N/A 34.866±0.00 21.525±0.00 77.455±24.46 92.708±0.00 40.088±0.00
ENST00000448864 390.880±0.00 503.050±0.00 13.819±0.00 158.077±116.55 237.282±162.11 411.372±362.21 150.062±117.04 175.374±129.55 159.136±60.83 424.602±348.21 157.789±128.81 626.462±602.92 446.829±273.46 303.762±274.46
ENST00000464167 N/A N/A 1.768±0.00 8.127±0.00 N/A N/A N/A N/A N/A N/A 3.719±0.00 60.239±0.00 N/A 3.420±0.00
ENST00000485439 N/A N/A 4.940±0.00 20.667±0.00 34.273±0.00 16.962±0.00 12.331±0.00 13.012±0.00 40.381±0.00 15.638±0.00 N/A 26.046±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C8 CIL_0006C8_0001 CGP 3:197791226-197960142
CIL_0006C9 CIL_0006C9_0001 CGP 3:197889075-197960142
CIL_0006CA CIL_0006CA_0001 CGP 3:197949987-198043720

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006364 IMP rRNA processing
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0042273 IMP ribosomal large subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088030 rpl35a ribosomal protein L35a protein_coding Danio_rerio
ENSMUSG00000060636 Rpl35a ribosomal protein L35A protein_coding Mus_musculus

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