C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger and SCAN domains 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061894 Zscan20 10090 - 4:128583539-128610098 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000084276 Zscan20-006 128583539-128589962 processed_transcript
  ENSMUST00000097877 Zscan20-001 128583547-128610098 protein_coding
  ENSMUST00000135309 Zscan20-002 128585375-128610042 nonsense_mediated_decay
  ENSMUST00000141040 Zscan20-004 128604477-128609981 protein_coding
  ENSMUST00000147876 Zscan20-003 128604443-128609995 protein_coding
  ENSMUST00000151226 Zscan20-005 128601431-128610034 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084276ENSMUST00000097877ENSMUST00000135309ENSMUST00000151226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084276 0.433±0.19 0.408±0.00 0.337±0.03 0.422±0.00 0.816±0.00 0.366±0.08 0.260±0.11 0.333±0.03 0.287±0.00 0.340±0.04 0.178±0.05 0.863±0.41 0.362±0.21 1.904±0.00
ENSMUST00000097877 0.415±0.23 0.539±0.24 0.681±0.01 0.351±0.19 0.626±0.42 0.613±0.29 0.526±0.00 0.369±0.14 0.249±0.12 0.755±0.31 0.363±0.17 0.509±0.11 0.439±0.24 1.745±0.51
ENSMUST00000135309 0.413±0.14 0.424±0.15 N/A 0.771±0.27 0.723±0.33 0.744±0.25 0.322±0.10 0.477±0.15 0.252±0.10 0.285±0.05 0.209±0.00 1.079±0.41 0.486±0.31 1.652±0.38
ENSMUST00000151226 N/A N/A N/A N/A 0.416±0.08 0.341±0.00 N/A 0.136±0.00 N/A 0.295±0.00 N/A 0.496±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F1 CIL_0008F1_0002 VISTA 4:128414851-129016970
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000094859 si:dkey-11o15.10 si:dkey-11o15.10 protein_coding Danio_rerio
ENSDARG00000097059 si:dkey-159n16.4 si:dkey-159n16.4 protein_coding Danio_rerio
ENSDARG00000097776 protein_coding Danio_rerio
ENSG00000121903 ZSCAN20 zinc finger and SCAN domain containing 20 protein_coding Homo_sapiens

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