C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA D630045J12 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000063455 D630045J12Rik 10090 - 6:38123174-38254009 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000117556 D630045J12Rik-001 38123174-38196593 protein_coding
  ENSMUST00000127925 D630045J12Rik-003 38126014-38147431 retained_intron
  ENSMUST00000144973 D630045J12Rik-004 38126020-38147374 retained_intron
  ENSMUST00000149557 D630045J12Rik-002 38137442-38194422 protein_coding
  ENSMUST00000152464 D630045J12Rik-005 38158128-38168616 retained_intron
  ENSMUST00000169256 D630045J12Rik-201 38123176-38254009 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117556ENSMUST00000127925ENSMUST00000144973ENSMUST00000149557ENSMUST00000169256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117556 1.449±1.38 N/A 0.504±0.11 3.500±2.35 0.193±0.09 N/A N/A 0.168±0.05 N/A 0.028±0.01 0.848±0.20 N/A N/A
ENSMUST00000127925 N/A 0.774±0.02 N/A N/A 0.525±0.07 N/A N/A N/A N/A 0.077±0.00 N/A N/A N/A
ENSMUST00000144973 N/A N/A N/A 2.691±0.00 N/A N/A N/A N/A N/A 0.049±0.01 1.304±0.00 2.406±1.45 0.735±0.00
ENSMUST00000149557 N/A N/A N/A N/A 0.476±0.00 N/A N/A N/A N/A N/A 4.457±1.01 N/A N/A
ENSMUST00000169256 2.522±1.83 0.607±0.10 1.384±0.25 6.050±3.07 0.148±0.00 0.339±0.00 7.307±2.04 0.157±0.04 1.319±0.17 0.020±0.01 1.075±0.79 1.111±0.91 0.188±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QA CIL_0002QA_0002 CGP 6:37983739-38124586
CIL_0002Q9 CIL_0002Q9_0002 CGP 6:38048483-38124586
CIL_0002Q8 CIL_0002Q8_0002 CGP 6:38109353-38254009
CIL_0002Q7 CIL_0002Q7_0002 CGP 6:38123174-38299259

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063008 si:dkeyp-27e10.3 si:dkeyp-27e10.3 protein_coding Danio_rerio
ENSDARG00000063361 si:ch211-1e14.1 si:ch211-1e14.1 protein_coding Danio_rerio
ENSG00000122778 KIAA1549 KIAA1549 protein_coding Homo_sapiens

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