C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain and WD repeat domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000063663 Brwd3 10090 - X:108737016-108834372 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041866 Brwd3-002 108742568-108834372 nonsense_mediated_decay
  ENSMUST00000101283 Brwd3-004 108820897-108834346 protein_coding
  ENSMUST00000134434 Brwd3-005 108803352-108834340 retained_intron
  ENSMUST00000144521 Brwd3-003 108742568-108834372 nonsense_mediated_decay
  ENSMUST00000150434 Brwd3-001 108737016-108834348 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041866ENSMUST00000134434ENSMUST00000144521ENSMUST00000150434
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.261±0.08 0.423±0.00
ENSMUST00000134434 N/A N/A N/A N/A N/A 0.826±0.00 N/A 0.436±0.00 N/A N/A N/A 0.435±0.00 N/A N/A
ENSMUST00000144521 N/A 0.079±0.00 N/A 0.856±0.00 0.212±0.00 0.146±0.00 N/A N/A 0.143±0.03 N/A N/A 2.599±0.00 7.307±0.12 0.813±0.89
ENSMUST00000150434 0.856±0.43 0.430±0.15 0.457±0.15 1.329±0.83 0.949±0.20 0.566±0.15 0.349±0.10 0.497±0.10 0.677±0.16 0.995±0.14 0.103±0.02 0.960±0.28 2.695±0.98 0.764±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KC CIL_0003KC_0002 CGP X:108737016-109013404

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007010 ISS cytoskeleton organization
GO:0008360 ISS regulation of cell shape

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035540 brwd3 bromodomain and WD repeat domain containing 3 protein_coding Danio_rerio
ENSG00000165288 BRWD3 bromodomain and WD repeat domain containing 3 protein_coding Homo_sapiens

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