C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 3b, subunit 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068856 Sf3b4 10090 + 3:96172332-96177564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076372 Sf3b4-001 96172332-96177564 protein_coding
  ENSMUST00000153977 Sf3b4-002 96172547-96173346 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076372 15.949±5.07 50.540±3.26 21.550±1.96 15.116±7.36 25.132±10.81 28.487±2.65 5.341±1.80 16.873±1.27 17.746±10.24 23.521±1.60 4.225±0.33 33.012±12.51 20.946±11.10 36.324±18.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0005689 IEA U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0048026 IMP positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018574 sf3b4 splicing factor 3b, subunit 4 protein_coding Danio_rerio
ENSG00000143368 SF3B4 splicing factor 3b, subunit 4, 49kDa protein_coding Homo_sapiens

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