C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3b, subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076372 Sf3b4-001 ENSMUSG00000068856 10090 + 3:96172332-96177564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076372 15.949±5.07 50.540±3.26 21.550±1.96 15.116±7.36 25.132±10.81 28.487±2.65 5.341±1.80 16.873±1.27 17.746±10.24 23.521±1.60 4.225±0.33 33.012±12.51 20.946±11.10 36.324±18.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0005689 IEA U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0048026 IMP positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000271628 SF3B4-001 protein_coding Homo_sapiens 0 1768
ENST00000457312 SF3B4-002 protein_coding Homo_sapiens 0 870

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