C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FCH domain only 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000070000 Fcho1 10090 - 8:71708387-71725716 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000093444 Fcho1-201 71708387-71721307 protein_coding
  ENSMUST00000123425 Fcho1-006 71712542-71715553 nonsense_mediated_decay
  ENSMUST00000125092 Fcho1-004 71717215-71723347 protein_coding
  ENSMUST00000126455 Fcho1-007 71715862-71721865 processed_transcript
  ENSMUST00000127005 Fcho1-010 71709689-71712179 retained_intron
  ENSMUST00000136640 Fcho1-003 71708653-71725666 nonsense_mediated_decay
  ENSMUST00000141323 Fcho1-009 71714360-71716635 retained_intron
  ENSMUST00000143699 Fcho1-002 71708420-71725666 retained_intron
  ENSMUST00000146100 Fcho1-001 71708394-71725716 protein_coding
  ENSMUST00000149363 Fcho1-011 71709637-71711106 retained_intron
  ENSMUST00000152742 Fcho1-005 71716817-71725647 retained_intron
  ENSMUST00000153800 Fcho1-008 71715767-71725704 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093444ENSMUST00000123425ENSMUST00000125092ENSMUST00000126455ENSMUST00000127005ENSMUST00000136640ENSMUST00000141323ENSMUST00000143699ENSMUST00000146100ENSMUST00000149363ENSMUST00000153800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093444 0.488±0.01 0.637±0.13 N/A N/A 6.219±4.50 2.232±0.68 N/A 0.172±0.00 0.066±0.02 1.115±0.00 0.036±0.01 1.519±0.38 0.315±0.00 0.044±0.00
ENSMUST00000123425 N/A N/A N/A N/A 2.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.275±0.10 N/A 0.489±0.00 N/A
ENSMUST00000126455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.370±0.00 1.030±0.00 N/A
ENSMUST00000127005 N/A 1.136±0.48 1.032±0.00 N/A 9.026±6.00 4.144±0.71 0.546±0.30 0.670±0.32 0.305±0.20 2.885±0.04 0.037±0.00 2.347±0.86 N/A 0.434±0.00
ENSMUST00000136640 0.207±0.10 N/A N/A N/A N/A N/A 0.089±0.00 N/A 2.174±0.22 N/A 0.071±0.00 0.365±0.00 0.206±0.04 N/A
ENSMUST00000141323 N/A N/A N/A N/A 2.705±0.00 N/A N/A N/A N/A N/A 0.068±0.03 1.064±0.00 0.273±0.00 0.652±0.00
ENSMUST00000143699 0.496±0.26 0.616±0.29 0.416±0.00 15.532±5.69 8.070±5.42 3.406±1.03 0.266±0.15 0.566±0.10 2.442±1.63 1.832±0.61 N/A 1.157±0.40 0.222±0.11 0.312±0.09
ENSMUST00000146100 0.557±0.00 0.376±0.12 0.779±0.02 20.916±3.48 4.672±2.29 N/A 0.217±0.07 0.669±0.27 3.876±2.07 1.719±0.96 0.034±0.00 0.736±0.23 0.365±0.09 0.158±0.05
ENSMUST00000149363 N/A N/A N/A N/A N/A N/A 0.298±0.00 2.210±0.00 0.064±0.00 N/A N/A N/A N/A N/A
ENSMUST00000153800 N/A N/A N/A 45.112±0.00 N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A 0.850±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 ISS plasma membrane
GO:0005905 ISS coated pit
GO:0030136 IEA clathrin-coated vesicle
GO:0035612 IEA AP-2 adaptor complex binding
GO:0048268 ISS clathrin coat assembly
GO:0072583 ISS clathrin-mediated endocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015356 FCHO1 FCH domain only 1 protein_coding Danio_rerio
ENSG00000130475 FCHO1 FCH domain only 1 protein_coding Homo_sapiens

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