C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: armadillo repeat containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071324 Armc2 10090 - 10:41914990-42018442 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000095729 Armc2-201 41915000-42018382 protein_coding
  ENSMUST00000105503 Armc2-006 41914993-41976744 retained_intron
  ENSMUST00000160262 Armc2-001 41914990-42018436 protein_coding
  ENSMUST00000160367 Armc2-007 41916051-41976122 retained_intron
  ENSMUST00000161081 Armc2-003 42000349-42018382 protein_coding
  ENSMUST00000161167 Armc2-005 41986614-41993166 protein_coding
  ENSMUST00000161927 Armc2-002 41916807-42018442 nonsense_mediated_decay
  ENSMUST00000162405 Armc2-004 41999808-42018380 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095729ENSMUST00000105503ENSMUST00000160262ENSMUST00000160367ENSMUST00000161081ENSMUST00000161167ENSMUST00000161927ENSMUST00000162405
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095729 0.053±0.01 0.149±0.00 0.114±0.00 0.635±0.34 0.044±0.00 0.064±0.01 0.054±0.04 0.027±0.00 0.265±0.12 N/A 0.310±0.14 0.035±0.00 3.635±0.76
ENSMUST00000105503 0.047±0.01 0.123±0.00 0.077±0.01 0.235±0.09 0.057±0.02 0.037±0.00 0.035±0.00 0.012±0.00 0.184±0.06 0.029±0.00 0.208±0.09 0.038±0.02 N/A
ENSMUST00000160262 0.038±0.02 N/A N/A N/A 0.069±0.02 N/A 0.068±0.03 0.012±0.00 N/A 0.027±0.02 0.298±0.20 0.028±0.01 N/A
ENSMUST00000160367 N/A 0.275±0.15 N/A N/A 0.044±0.01 0.057±0.00 0.036±0.00 0.017±0.00 0.156±0.00 0.011±0.00 0.388±0.12 N/A N/A
ENSMUST00000161081 N/A 0.788±0.00 N/A N/A 0.529±0.12 0.367±0.12 0.088±0.00 N/A N/A 0.084±0.00 1.508±0.00 N/A N/A
ENSMUST00000161167 0.328±0.01 0.696±0.00 N/A N/A 0.176±0.00 0.170±0.00 0.135±0.06 N/A N/A 0.191±0.09 N/A 0.185±0.06 N/A
ENSMUST00000161927 0.056±0.02 0.086±0.02 0.139±0.00 N/A 0.090±0.03 0.106±0.02 0.033±0.00 N/A 0.257±0.00 0.015±0.01 0.366±0.10 0.063±0.05 5.362±1.37
ENSMUST00000162405 0.139±0.00 0.300±0.05 0.310±0.00 N/A N/A 0.378±0.08 0.162±0.07 0.030±0.00 N/A N/A N/A 0.097±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034X CIL_00034X_0002 CGP 10:41914990-42276755

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022660 armc2 armadillo repeat containing 2 protein_coding Danio_rerio
ENSG00000118690 ARMC2 armadillo repeat containing 2 protein_coding Homo_sapiens

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