C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 2510002D24 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071632 2510002D24Rik 10090 + 16:18836578-18840160 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055413 2510002D24Rik-001 18836578-18840160 protein_coding
  ENSMUST00000123146 2510002D24Rik-002 18836581-18837387 protein_coding
  ENSMUST00000190776 2510002D24Rik-004 18836655-18839800 retained_intron
  ENSMUST00000191388 2510002D24Rik-003 18836581-18840045 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000055413ENSMUST00000123146ENSMUST00000190776
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000055413 6.117±0.00 20.335±3.83 17.848±4.32 16.513±5.65 30.375±2.25 7.410±2.55 9.831±3.77 13.698±5.14 11.210±1.18 4.465±1.49 23.496±3.67 10.193±0.79
ENSMUST00000123146 N/A 47.142±9.06 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190776 20.275±4.28 22.436±8.21 12.411±2.81 26.484±8.68 10.475±0.00 17.205±4.36 16.429±2.39 9.976±2.93 14.561±3.66 7.364±1.16 15.463±1.13 13.420±3.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092360 C8H22orf39 chromosome 22 open reading frame 39 protein_coding Danio_rerio
ENSG00000242259 C22orf39 chromosome 22 open reading frame 39 protein_coding Homo_sapiens

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