C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 39 (zinc transporter), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000072572 Slc39a2 10090 + 14:51892889-51896745 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047726 Slc39a2-001 51893610-51896745 protein_coding
  ENSMUST00000160668 Slc39a2-002 51892889-51895806 retained_intron
  ENSMUST00000161888 Slc39a2-003 51893656-51895799 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverLungMusclePlacentaENSMUST00000160668ENSMUST00000161888
Transcript ID Adipose Brain Breast Heart Liver Lung Muscle Placenta
ENSMUST00000160668 3.044±0.00 5.154±1.43 1.099±0.00 0.885±0.00 1.574±0.11 2.238±0.11 1.246±0.25 1.869±0.02
ENSMUST00000161888 N/A N/A N/A N/A N/A N/A N/A 3.945±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004EJ CIL_0004EJ_0002 CGP 14:51853699-51893039
CIL_0004F1 CIL_0004F1_0002 CGP 14:51884842-51896745
CIL_0004TH CIL_0004TH_0002 CGP 14:51892889-51913488

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005385 IDA zinc ion transmembrane transporter activity
GO:0005886 IEA plasma membrane
GO:0006829 IDA zinc ion transport
GO:0016020 IEA membrane
GO:0016023 IEA cytoplasmic membrane-bounded vesicle
GO:0071577 IDA zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058257 slc39a1 solute carrier family 39 (zinc transporter), member 1 protein_coding Danio_rerio
ENSG00000165794 SLC39A2 solute carrier family 39 (zinc transporter), member 2 protein_coding Homo_sapiens

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