Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	solute carrier family 39 (zinc transporter), member 2
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000165794	SLC39A2	9606	+	14:20999255-21001871	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENST00000298681		SLC39A2-001	20999290-21001871	protein_coding
	ENST00000554128		SLC39A2-003	20999291-21000033	retained_intron
	ENST00000554422		SLC39A2-002	20999255-21001721	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Brain	Breast	Colon	Liver	Lung	Ovary	Placenta	Testis
ENST00000298681	N/A	N/A	N/A	0.105±0.05	0.398±0.07	0.010±0.00	0.064±0.00	0.210±0.14	0.233±0.14	0.111±0.00
ENST00000554128	0.085±0.00	N/A	N/A	N/A	0.360±0.00	N/A	0.059±0.00	N/A	N/A	N/A
ENST00000554422	N/A	0.139±0.00	0.047±0.00	0.033±0.00	N/A	N/A	N/A	N/A	0.074±0.00	0.093±0.00

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0004F1	CIL_0004F1_0001	CGP	14:20989770-21001871
CIL_0004TH	CIL_0004TH_0001	CGP	14:20999255-21070872

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005385	IMP	zinc ion transmembrane transporter activity
GO:0005886	IDA	plasma membrane
GO:0005887	TAS	integral component of plasma membrane
GO:0006829	TAS	zinc ion transport
GO:0016020	IEA	membrane
GO:0016023	IDA	cytoplasmic membrane-bounded vesicle
GO:0030001	IEA	metal ion transport
GO:0046873	IEA	metal ion transmembrane transporter activity
GO:0055085	TAS:IEA	transmembrane transport
GO:0071577	TAS	zinc ion transmembrane transport

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000058257	slc39a1	solute carrier family 39 (zinc transporter), member 1	protein_coding	Danio_rerio
ENSMUSG00000072572	Slc39a2	solute carrier family 39 (zinc transporter), member 2	protein_coding	Mus_musculus

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